ENSG00000198765


Homo sapiens

Features
Gene ID: ENSG00000198765
  
Biological name :SYCP1
  
Synonyms : Q15431 / SYCP1 / synaptonemal complex protein 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.2
Gene start: 114854803
Gene end: 114995370
  
Corresponding Affymetrix probe sets: 206740_x_at (Human Genome U133 Plus 2.0 Array)   216917_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000482532
Ensembl peptide - ENSP00000358535
Ensembl peptide - ENSP00000410011
Ensembl peptide - ENSP00000480997
Ensembl peptide - ENSP00000358531
NCBI entrez gene - 6847     See in Manteia.
OMIM - 602162
RefSeq - XM_017002185
RefSeq - XM_005271155
RefSeq - XM_005271156
RefSeq - XM_006710859
RefSeq - XM_011542037
RefSeq - XM_011542038
RefSeq - XM_011542039
RefSeq - XM_017002184
RefSeq - NM_001282541
RefSeq - NM_001282542
RefSeq - NM_003176
RefSeq Peptide - NP_001269470
RefSeq Peptide - NP_001269471
RefSeq Peptide - NP_003167
swissprot - A0A087WZC3
swissprot - A0A024R0I2
swissprot - Q15431
swissprot - Q5VXJ5
Ensembl - ENSG00000198765
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sycp1ENSDARG00000003904Danio rerio
 SYCP1ENSGALG00000002511Gallus gallus
 Sycp1ENSMUSG00000027855Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008827  Synaptonemal complex protein 1
 IPR024835  Synaptonemal complex protein 1/2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000711 meiotic DNA repair synthesis IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007129 synapsis ISS
 biological_processGO:0007130 synaptonemal complex assembly IEA
 biological_processGO:0007131 reciprocal meiotic recombination TAS
 biological_processGO:0007283 spermatogenesis TAS
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0035092 sperm chromatin condensation IEA
 biological_processGO:0051026 chiasma assembly IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 biological_processGO:0051878 lateral element assembly IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IEA
 cellular_componentGO:0000795 synaptonemal complex IEA
 cellular_componentGO:0000801 central element IEA
 cellular_componentGO:0000802 transverse filament IEA
 cellular_componentGO:0001673 male germ cell nucleus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding TAS


Pathways (from Reactome)
Pathway description
Meiotic synapsis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000198765 SYCP1 / Q15431 / synaptonemal complex protein 1  / complex






 

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