ENSGALG00000005404


Gallus gallus

Features
Gene ID: ENSGALG00000005404
  
Biological name :LRTM1
  
Synonyms : leucine rich repeats and transmembrane domains 1 / LRTM1
  
Possible biological names infered from orthology : Leucine-rich repeat and transmembrane domain-containing protein 1 / Q8BXQ3 / Q9HBL6
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 7663523
Gene end: 7667127
  
Corresponding Affymetrix probe sets: GgaAffx.3395.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008665
swissprot - F1NX85
Ensembl - ENSGALG00000005404
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrtm1ENSDARG00000098742Danio rerio
 LRTM1ENSG00000144771Homo sapiens
 Lrtm1ENSMUSG00000045776Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRTM2 / leucine rich repeats and transmembrane domains 2 / Q8BGX3* / Q8N967* / Leucine-rich repeat and transmembrane domain-containing protein 2 *ENSGALG0000002621434
RTN4R* / Q99PI8* / Q9BZR6* / reticulon 4 receptor*ENSGALG0000000773219
LRRC55 / leucine rich repeat containing 55 / Q3UY51* / Q6ZSA7* / Leucine-rich repeat-containing protein 55 *ENSGALG0000002913019
RTN4RL2 / reticulon 4 receptor like 2 / Q7M6Z0* / Q86UN3*ENSGALG0000003290319
LRRC38 / leucine rich repeat containing 38 / A2VDH3* / Q5VT99* / Leucine-rich repeat-containing protein 38 *ENSGALG0000000409718
LRRC52 / leucine rich repeat containing 52 / Q5M8M9* / Q8N7C0* / Leucine-rich repeat-containing protein 52 *ENSGALG0000000344317
RTN4RL1 / reticulon 4 receptor like 1 / Q86UN2* / Q8K0S5*ENSGALG0000002158917
LRRC26* / Q2I0M4* / Q91W20* / leucine rich repeat containing 26* / Leucine-rich repeat-containing protein 26 *ENSGALG0000004590116


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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