ENSGALG00000011291


Gallus gallus

Features
Gene ID: ENSGALG00000011291
  
Biological name :NR1D2
  
Synonyms : NR1D2 / nuclear receptor subfamily 1 group D member 2
  
Possible biological names infered from orthology : Q14995 / Q60674
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 37345920
Gene end: 37368540
  
Corresponding Affymetrix probe sets: Gga.4315.1.S1_at (Chicken Array)   Gga.4315.1.S2_at (Chicken Array)   Gga.4315.2.S1_a_at (Chicken Array)   Gga.4315.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053258
Ensembl peptide - ENSGALP00000030528
NCBI entrez gene - 396125     See in Manteia.
RefSeq - XM_015281307
RefSeq - NM_205205
RefSeq - XM_015281306
RefSeq Peptide - NP_990536
swissprot - Q90970
swissprot - A0A1D6UPS4
Ensembl - ENSGALG00000011291
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr1d2bENSDARG00000009594Danio rerio
 NR1D2ENSG00000174738Homo sapiens
 Nr1d2ENSMUSG00000021775Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000000103524
PPARD / peroxisome proliferator-activated receptor delta / P35396* / Q03181*ENSGALG0000000258823
RORA / nuclear receptor ROR-alpha / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSGALG0000000375923
RORB / RAR related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSGALG0000001515023
PPARA / peroxisome proliferator-activated receptor alpha / P23204* / Q07869*ENSGALG0000004147023
PPARG / peroxisome proliferator activated receptor gamma / P37231*ENSGALG0000000497422
RORC / RAR related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSGALG0000003394122
NR5A2 / nuclear receptor subfamily 5 group A member 2 / O00482* / P45448*ENSGALG0000000218221
NR6A1 / nuclear receptor subfamily 6 group A member 1 / Q15406* / Q64249*ENSGALG0000000107319
NR5A1 / steroidogenic factor 1 / P33242* / Q13285* / nuclear receptor subfamily 5 group A member 1*ENSGALG0000000108018


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003078  Retinoic acid receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0019216 regulation of lipid metabolic process IEA
 biological_processGO:0042752 regulation of circadian rhythm IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048384 retinoic acid receptor signaling pathway IEA
 biological_processGO:0050727 regulation of inflammatory response IEA
 biological_processGO:0055088 lipid homeostasis IEA
 biological_processGO:2001014 regulation of skeletal muscle cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003708 retinoic acid receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr