ENSGALG00000017389


Gallus gallus

Features
Gene ID: ENSGALG00000017389
  
Biological name :SIX4
  
Synonyms : SIX4 / SIX homeobox 4
  
Possible biological names infered from orthology : Homeobox protein SIX4 / Q61321 / Q9UIU6
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 54464360
Gene end: 54470719
  
Corresponding Affymetrix probe sets: Gga.334.1.S1_at (Chicken Array)   Gga.334.1.S1_s_at (Chicken Array)   GgaAffx.25252.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000028023
NCBI entrez gene - 395601     See in Manteia.
RefSeq - XM_003641442
RefSeq - XM_015287909
swissprot - F1NHV5
Ensembl - ENSGALG00000017389
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six4aENSDARG00000004695Danio rerio
 six4bENSDARG00000031983Danio rerio
 SIX4ENSG00000100625Homo sapiens
 Six4ENSMUSG00000034460Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX2 / homeobox protein SIX2 / Q62232* / Q9NPC8* / SIX homeobox 2*ENSGALG0000002330316
SIX1 / SIX homeobox 1 / Q15475* / Q62231* / Homeobox protein SIX1 *ENSGALG0000002940115
SIX3 / SIX homeobox 3 / O95343* / Q62233* / Homeobox protein SIX3 *ENSGALG0000003225915
SIX6 / O93307 / Homeobox protein SIX6 / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSGALG0000002035914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR031701  Homeobox protein SIX1, N-terminal SD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0008582 regulation of synaptic growth at neuromuscular junction IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0030238 male sex determination IEA
 biological_processGO:0030910 olfactory placode formation IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0034504 protein localization to nucleus IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0045214 sarcomere organization IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046661 male sex differentiation IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048699 generation of neurons IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0050678 regulation of epithelial cell proliferation IEA
 biological_processGO:0051451 myoblast migration IEA
 biological_processGO:0060037 pharyngeal system development IEA
 biological_processGO:0061055 myotome development IEA
 biological_processGO:0061197 fungiform papilla morphogenesis IEA
 biological_processGO:0061551 trigeminal ganglion development IEA
 biological_processGO:0072075 metanephric mesenchyme development IEA
 biological_processGO:0072095 regulation of branch elongation involved in ureteric bud branching IEA
 biological_processGO:0072107 positive regulation of ureteric bud formation IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0098528 skeletal muscle fiber differentiation IEA
 biological_processGO:1902725 negative regulation of satellite cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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