ENSGALG00000020359


Gallus gallus

Features
Gene ID: ENSGALG00000020359
  
Biological name :SIX6
  
Synonyms : Homeobox protein SIX6 / O93307 / SIX6
  
Possible biological names infered from orthology : O95475 / Q9QZ28 / sine oculis-related homeobox 6 / SIX homeobox 6
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 54510940
Gene end: 54513739
  
Corresponding Affymetrix probe sets: Gga.333.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000036574
NCBI entrez gene - 395843     See in Manteia.
RefSeq - NM_204994
RefSeq - XM_015287285
RefSeq Peptide - NP_990325
swissprot - O93307
Ensembl - ENSGALG00000020359
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six6aENSDARG00000025187Danio rerio
 six6bENSDARG00000031316Danio rerio
 SIX6ENSG00000184302Homo sapiens
 Six6ENSMUSG00000021099Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX3 / SIX homeobox 3 / O95343* / Q62233* / Homeobox protein SIX3 *ENSGALG0000003225987
SIX2 / homeobox protein SIX2 / Q62232* / Q9NPC8* / SIX homeobox 2*ENSGALG0000002330357
SIX1 / SIX homeobox 1 / Q15475* / Q62231* / Homeobox protein SIX1 *ENSGALG0000002940156
SIX4 / SIX homeobox 4 / Q61321* / Q9UIU6* / Homeobox protein SIX4 *ENSGALG0000001738949


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR031701  Homeobox protein SIX1, N-terminal SD domain
 IPR032947  Homeobox protein SIX6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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