ENSGALG00000031582


Gallus gallus

Features
Gene ID: ENSGALG00000031582
  
Biological name :RAB1B
  
Synonyms : RAB1A, member RAS oncogene family / RAB1B
  
Possible biological names infered from orthology : P62820 / P62821 / Rab1 / RAB1A / Ras-related protein Rab-1A
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 9975365
Gene end: 9988442
  
Corresponding Affymetrix probe sets: Gga.13527.1.S1_at (Chicken Array)   Gga.4553.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051032
Ensembl peptide - ENSGALP00000060564
NCBI entrez gene - 421273     See in Manteia.
RefSeq - NM_001270662
RefSeq Peptide - NP_001257591
swissprot - A0A1L1RP46
swissprot - A0A1D5PE33
Ensembl - ENSGALG00000031582
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab1abENSDARG00000029663Danio rerio
 RAB1AENSG00000138069Homo sapiens
 Rab1ENSMUSG00000020149Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB35 / RAB35, member RAS oncogene family / Q15286* / Q6PHN9*ENSGALG0000000730853
RAB43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSGALG0000000502145
RAB19 / RAB19, member RAS oncogene family / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSGALG0000001285044
RAB30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSGALG0000001724843
RAB26 / RAB26, member RAS oncogene family / Q504M8* / Q9ULW5*ENSGALG0000003241842
RAB40B / P0C0E4* / Q12829* / Q8WXH6* / RAB40A* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family* / RAB40B, member RAS oncogene family*ENSGALG0000000154540
RAB33A / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSGALG0000002404940
RAB33B / Q5ZHV1 / Ras-related protein Rab-33B / Q9H082* / O35963* / RAB33B, member RAS oncogene family*ENSGALG0000000979039
RAB40C / RAB40C, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSGALG0000003048139
RAB37 / RAB37, member RAS oncogene family / Q96AX2*ENSGALG0000002778936


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007030 Golgi organization IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0019068 virion assembly IEA
 biological_processGO:0030252 growth hormone secretion IEA
 biological_processGO:0032402 melanosome transport IEA
 biological_processGO:0034446 substrate adhesion-dependent cell spreading IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0047496 vesicle transport along microtubule IEA
 biological_processGO:0072606 interleukin-8 secretion IEA
 biological_processGO:0090110 cargo loading into COPII-coated vesicle IEA
 biological_processGO:1903020 positive regulation of glycoprotein metabolic process IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0042470 melanosome IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
Golgi Cisternae Pericentriolar Stack Reorganization
COPII-mediated vesicle transport
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex / reaction
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / complex / reaction
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000006110 PLK1 / serine/threonine-protein kinase PLK1 / P53350* / Q07832* / polo like kinase 1*  / complex
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / complex / reaction






 

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