ENSGALG00000039704


Gallus gallus

Features
Gene ID: ENSGALG00000039704
  
Biological name :SEC22B
  
Synonyms : Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b
  
Possible biological names infered from orthology : O08547 / O75396 / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 4162445
Gene end: 4171312
  
Corresponding Affymetrix probe sets: GgaAffx.12423.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051201
NCBI entrez gene - 424377     See in Manteia.
RefSeq - NM_001031266
RefSeq Peptide - NP_001026437
swissprot - Q5ZJW4
Ensembl - ENSGALG00000039704
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7SXP0ENSDARG00000100435Danio rerio
 sec22baENSDARG00000030108Danio rerio
 O75396ENSG00000265808Homo sapiens
 O08547ENSMUSG00000027879Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC22A / SEC22 homolog A, vesicle trafficking protein / Q8BH47* / Q96IW7*ENSGALG0000001169731
SEC22C / SEC22 homolog C, vesicle trafficking protein / Q8BXT9* / Q9BRL7* / Vesicle-trafficking protein SEC22c *ENSGALG0000000526822


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0045732 positive regulation of protein catabolic process IEA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 biological_processGO:1902902 negative regulation of autophagosome assembly IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IEA
 cellular_componentGO:0042470 melanosome IEA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
COPII-mediated vesicle transport
Cargo concentration in the ER
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008022 TAPBP / TAP binding protein / O15533*  / reaction
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex / reaction
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000029381 TAP2 / Q03519* / P36371* / AL669918.1* / transporter 2, ATP binding cassette subfamily B member* / transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)*  / reaction
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSGALG00000002364 SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*  / complex / reaction
 ENSGALG00000004424 SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / complex / reaction
 ENSGALG00000003703 USE1 / vesicle transport protein USE1 / Q9CQ56* / Q9NZ43* / unconventional SNARE in the ER 1* / unconventional SNARE in the ER 1 homolog (S. cerevisiae)*  / complex
 ENSGALG00000002882 BNIP1 / BCL2 interacting protein 1 / Q12981* / Q6QD59* / Vesicle transport protein SEC20 *  / complex
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / complex / reaction
 ENSGALG00000015012 STX18 / syntaxin 18 / Q8VDS8* / Q9P2W9*  / complex
 ENSGALG00000009916 SCFD1 / sec1 family domain containing 1 / Q8BRF7* / Q8WVM8* / Sec1 family domain-containing protein 1 *  / complex / reaction
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / complex / reaction
 ENSGALG00000001107 GOSR2 / O14653* / O35166* / AC005670.2* / golgi SNAP receptor complex member 2*  / complex / reaction
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / complex / reaction
 ENSGALG00000024485 BET1 / Bet1 golgi vesicular membrane trafficking protein / O15155* / O35623* / BET1 homolog *  / complex / reaction
 ENSGALG00000031582 RAB1B / RAB1A, member RAS oncogene family / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A *  / complex / reaction






 

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