ENSGALG00000035539


Gallus gallus

Features
Gene ID: ENSGALG00000035539
  
Biological name :HOXC4
  
Synonyms : homeobox C4 / HOXC4
  
Possible biological names infered from orthology : P09017 / Q08624
  
Species: Gallus gallus
  
Chr. number: 33
Strand: 1
Band:
Gene start: 1094752
Gene end: 1096547
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000047584
NCBI entrez gene - 107055411     See in Manteia.
RefSeq - XM_015300328
swissprot - A0A1D5P4H6
Ensembl - ENSGALG00000035539
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc4aENSDARG00000070338Danio rerio
 HOXC4ENSG00000198353Homo sapiens
 Hoxc4ENSMUSG00000075394Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXB4 / P14840 / Homeobox protein Hox-B4 / P10284* / P17483* / homeobox B4*ENSGALG0000000028448
HOXA4 / P17277 / Homeobox protein Hox-A4 / Q00056* / homeobox A4*ENSGALG0000002262246
HOXD4 / homeobox D4 / P09016* / P10628* / Homeobox protein Hox-D4 *ENSGALG0000002341945
HOXA5 / Q6B3N0 / Homeobox protein Hox-A5 / P09021* / P20719* / homeobox A5*ENSGALG0000002592930
HOXB5ENSGALG0000003490729
HOXC6 / homeobox C6 / P09630* / P10629* / Homeobox protein Hox-C6 *ENSGALG0000003905127
HOXA7 / Q90VZ9 / Homeobox protein Hox-A7 / P02830* / P31268* / homeobox A7*ENSGALG0000002698926
HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSGALG0000003041626
HOXB7 / homeobox B7 / P09024* / P09629* / Homeobox protein Hox-B7 *ENSGALG0000003274025
HOXA6* / HOXB6* / P09023* / P09092* / P17509* / P31267* / homeobox B6* / homeobox A6* / Homeobox protein Hox-B6 * / Homeobox protein Hox-A6 *ENSGALG0000003761925
HOXA6 / Q5YLH5 / Homeobox protein Hox-A6 ENSGALG0000002890824
HOXC8 / Q9YH13 / Homeobox protein Hox-C8 / P09025* / P31273* / homeobox C8*ENSGALG0000003726223
HOXB8 / homeobox B8 / P09632* / P17481* / Homeobox protein Hox-B8 *ENSGALG0000004032023
CDX1 / Q9DEB6 / Homeobox protein CDX-1 / P18111* / P47902* / caudal type homeobox 1*ENSGALG0000000567921
CDX4* / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765621
HOXD8 / P23459 / Homeobox protein Hox-D8 / P13378* / P23463* / homeobox D8*ENSGALG0000003727221
CDX2 / homeobox protein CDX-2 / P43241* / Q99626* / caudal type homeobox 2*ENSGALG0000003498320
CDX4 / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048562 embryonic organ morphogenesis IEA
 biological_processGO:0051216 cartilage development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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