Manteia

ENSGALG00000039051

Gallus gallus

Features

Gene ID:	ENSGALG00000039051

Biological name :	HOXC6

Synonyms :	homeobox C6 / HOXC6

Possible biological names infered from orthology :	Homeobox protein Hox-C6 / P09630 / P10629

Species:	Gallus gallus

Chr. number:	33
Strand:	1
Band:
Gene start:	1068344
Gene end:	1070269

Corresponding Affymetrix probe sets:	Gga.268.1.A1_at (Chicken Array) Gga.268.1.S1_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000047265 NCBI entrez gene - 100858368 See in Manteia. RefSeq - XM_003643454 RefSeq - XM_015300352 swissprot - A0A1D5P3L0 Ensembl - ENSGALG00000039051

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
hoxc6a	ENSDARG00000070343	Danio rerio
hoxc6b	ENSDARG00000101954	Danio rerio
HOXC6	ENSG00000197757	Homo sapiens
Hoxc6	ENSMUSG00000001661	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
HOXA7 / Q90VZ9 / Homeobox protein Hox-A7 / P02830* / P31268* / homeobox A7*	ENSGALG00000026989	37
HOXA6 / Q5YLH5 / Homeobox protein Hox-A6	ENSGALG00000028908	37
HOXA6* / HOXB6* / P09023* / P09092* / P17509* / P31267* / homeobox B6* / homeobox A6* / Homeobox protein Hox-B6 * / Homeobox protein Hox-A6 *	ENSGALG00000037619	37
HOXB7 / homeobox B7 / P09024* / P09629* / Homeobox protein Hox-B7 *	ENSGALG00000032740	34
HOXA5 / Q6B3N0 / Homeobox protein Hox-A5 / P09021* / P20719* / homeobox A5*	ENSGALG00000025929	33
HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *	ENSGALG00000030416	32
HOXC4 / homeobox C4 / P09017* / Q08624*	ENSGALG00000035539	32
HOXC8 / Q9YH13 / Homeobox protein Hox-C8 / P09025* / P31273* / homeobox C8*	ENSGALG00000037262	32
HOXB4 / P14840 / Homeobox protein Hox-B4 / P10284* / P17483* / homeobox B4*	ENSGALG00000000284	31
HOXD4 / homeobox D4 / P09016* / P10628* / Homeobox protein Hox-D4 *	ENSGALG00000023419	31
HOXB5	ENSGALG00000034907	31
HOXB8 / homeobox B8 / P09632* / P17481* / Homeobox protein Hox-B8 *	ENSGALG00000040320	31
HOXA4 / P17277 / Homeobox protein Hox-A4 / Q00056* / homeobox A4*	ENSGALG00000022622	30
HOXD8 / P23459 / Homeobox protein Hox-D8 / P13378* / P23463* / homeobox D8*	ENSGALG00000037272	27
CDX1 / Q9DEB6 / Homeobox protein CDX-1 / P18111* / P47902* / caudal type homeobox 1*	ENSGALG00000005679	24
CDX4* / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *	ENSGALG00000007656	21
CDX2 / homeobox protein CDX-2 / P43241* / Q99626* / caudal type homeobox 2*	ENSGALG00000034983	21
CDX4 / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *	ENSGALG00000007657	20

Protein motifs (from Interpro)

Interpro ID	Name
IPR001356	Homeobox domain
IPR001827	Homeobox protein, antennapedia type, conserved site
IPR009057	Homeobox-like domain superfamily
IPR017970	Homeobox, conserved site
IPR020479	Homeobox domain, metazoa

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006355	regulation of transcription, DNA-templated	IEA
biological_process	GO:0007275	multicellular organism development	IEA
biological_process	GO:0009952	anterior/posterior pattern specification	IEA
biological_process	GO:0048706	embryonic skeletal system development	IEA
cellular_component	GO:0005634	nucleus	IEA
cellular_component	GO:0005654	nucleoplasm	IEA
cellular_component	GO:0005829	cytosol	IEA
molecular_function	GO:0003677	DNA binding	IEA
molecular_function	GO:0003700	DNA-binding transcription factor activity	IEA
molecular_function	GO:0043565	sequence-specific DNA binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2025 contact: otassy@igbmc.fr