ENSGALG00000037262


Gallus gallus

Features
Gene ID: ENSGALG00000037262
  
Biological name :HOXC8
  
Synonyms : Homeobox protein Hox-C8 / HOXC8 / Q9YH13
  
Possible biological names infered from orthology : homeobox C8 / P09025 / P31273
  
Species: Gallus gallus
  
Chr. number: 33
Strand: 1
Band:
Gene start: 1045438
Gene end: 1048859
  
Corresponding Affymetrix probe sets: Gga.413.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050413
NCBI entrez gene - 395711     See in Manteia.
RefSeq - NM_204893
RefSeq Peptide - NP_990224
swissprot - Q9YH13
Ensembl - ENSGALG00000037262
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc8aENSDARG00000070346Danio rerio
 HOXC8ENSG00000037965Homo sapiens
 Hoxc8ENSMUSG00000001657Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXB8 / homeobox B8 / P09632* / P17481* / Homeobox protein Hox-B8 *ENSGALG0000004032063
HOXD8 / P23459 / Homeobox protein Hox-D8 / P13378* / P23463* / homeobox D8*ENSGALG0000003727250
HOXA7 / Q90VZ9 / Homeobox protein Hox-A7 / P02830* / P31268* / homeobox A7*ENSGALG0000002698936
HOXB7 / homeobox B7 / P09024* / P09629* / Homeobox protein Hox-B7 *ENSGALG0000003274033
HOXA6 / Q5YLH5 / Homeobox protein Hox-A6 ENSGALG0000002890831
HOXA6* / HOXB6* / P09023* / P09092* / P17509* / P31267* / homeobox B6* / homeobox A6* / Homeobox protein Hox-B6 * / Homeobox protein Hox-A6 *ENSGALG0000003761931
HOXC6 / homeobox C6 / P09630* / P10629* / Homeobox protein Hox-C6 *ENSGALG0000003905131
HOXA5 / Q6B3N0 / Homeobox protein Hox-A5 / P09021* / P20719* / homeobox A5*ENSGALG0000002592930
HOXB5ENSGALG0000003490730
HOXD4 / homeobox D4 / P09016* / P10628* / Homeobox protein Hox-D4 *ENSGALG0000002341928
HOXC4 / homeobox C4 / P09017* / Q08624*ENSGALG0000003553928
HOXB4 / P14840 / Homeobox protein Hox-B4 / P10284* / P17483* / homeobox B4*ENSGALG0000000028427
HOXA4 / P17277 / Homeobox protein Hox-A4 / Q00056* / homeobox A4*ENSGALG0000002262227
HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSGALG0000003041626
CDX1 / Q9DEB6 / Homeobox protein CDX-1 / P18111* / P47902* / caudal type homeobox 1*ENSGALG0000000567923
CDX4* / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765621
CDX4 / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765721
CDX2 / homeobox protein CDX-2 / P43241* / Q99626* / caudal type homeobox 2*ENSGALG0000003498321


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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