ENSMUSG00000043219


Mus musculus

Features
Gene ID: ENSMUSG00000043219
  
Biological name :Hoxa6
  
Synonyms : Homeobox protein Hox-A6 / Hoxa6 / P09092
  
Possible biological names infered from orthology : homeobox A6 / P31267
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: B3
Gene start: 52206288
Gene end: 52208722
  
Corresponding Affymetrix probe sets: 10544774 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000058755
NCBI entrez gene - 15403     See in Manteia.
MGI - MGI:96178
RefSeq - NM_010454
RefSeq Peptide - NP_034584
swissprot - P09092
swissprot - Q0VEU7
Ensembl - ENSMUSG00000043219
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000037619Gallus gallus
 HOXA6ENSG00000106006Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Hoxb6 / P09023 / Homeobox protein Hox-B6 / P17509* / homeobox B6*ENSMUSG0000000069053
Hoxb7 / P09024 / Homeobox protein Hox-B7 / P09629* / homeobox B7*ENSMUSG0000003872139
Hoxc6 / P10629 / Homeobox protein Hox-C6 / P09630* / homeobox C6*ENSMUSG0000000166138
Hoxa7 / P02830 / homeobox A7 / P31268*ENSMUSG0000003823638
Hoxb5 / P09079 / Homeobox protein Hox-B5 / P09067* / homeobox B5*ENSMUSG0000003870037
Hoxa5 / P09021 / Homeobox protein Hox-A5 / P20719* / homeobox A5*ENSMUSG0000003825335
Hoxb8 / P09632 / Homeobox protein Hox-B8 / P17481* / homeobox B8*ENSMUSG0000005664835
Hoxc8 / P09025 / Homeobox protein Hox-C8 / P31273* / homeobox C8*ENSMUSG0000000165732
Hoxd8 / P23463 / Homeobox protein Hox-D8 / P13378* / homeobox D8*ENSMUSG0000002710232
Hoxd4 / P10628 / homeobox D4 / P09016*ENSMUSG0000010117432
Hoxd4 / P10628 / Homeobox protein Hox-D4 / P09016* / homeobox D4*ENSMUSG0000011595632
Hoxc5 / P32043 / Homeobox protein Hox-C5 / Q00444* / homeobox C5*ENSMUSG0000002248531
Hoxb4 / P10284 / Homeobox protein Hox-B4 / P17483* / homeobox B4*ENSMUSG0000003869231
Hoxa4 / homeobox A4 / Q00056*ENSMUSG0000000094230
Hoxc4 / Q08624 / homeobox C4 / P09017*ENSMUSG0000007539430
Cdx1 / P18111 / Homeobox protein CDX-1 / P47902* / caudal type homeobox 1*ENSMUSG0000002461925
Cdx4 / Q07424 / Homeobox protein CDX-4 / O14627* / caudal type homeobox 4*ENSMUSG0000003132624
Cdx2 / P43241 / Homeobox protein CDX-2 / Q99626* / caudal type homeobox 2*ENSMUSG0000002964622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IMP
 biological_processGO:0048704 embryonic skeletal system morphogenesis IMP
 biological_processGO:0048706 embryonic skeletal system development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000154 rib fusion "appearance of one or more ribs as a single structure" [J:62022, J:62023]
Show

Allelic Composition: Hoxa5tm1Rob/Hoxa5tm1Rob,Hoxb5tm1Mrc/Hoxb5tm1Mrc,Hoxc5tm1Mrc/Hoxc5tm1Mrc
Genetic Background: involves: 129S/SvEv * 129S7/SvEvBrd

 MP:0000155 asymmetric rib attachment "loss of bilateral symmetry in rib attachments to the vertebral column or to the sternum" [J:19212]
Show

Allelic Composition: Hoxa4tm1Mrc/Hoxa4tm1Mrc
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

 MP:0000480 increased number of ribs "greater than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings, 2003]
Show

Allelic Composition: Hoxa4tm1Mrc/Hoxa4tm1Mrc
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

 MP:0003036 vertebral transformation "homeotic transformation of a specific vertebrae to adopt the fate of another" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0003048 abnormal cervical vertebrae morphology "malformation of any or all of the seven bony segments of the spine located anterior to the thoracic vertebrae" [MeSH:National Library of Medicine - Medical Subject Headings, 2003, csmith:Cynthia L. Smith, Mouse Genome Informatics Curator]
Show

Allelic Composition: Hoxa4tm1Mrc/Hoxa4tm1Mrc
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

 MP:0003345 decreased number of ribs "fewer than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, ncbi:Matthew Mailman, NCBI request]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004321 short sternum "reduced length of the long flat bone of the chest which articulates with clavicle and first seven rib pairs" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004322 abnormal sternebra morphology "any structural anomaly of one segments of the primordial sternum of the embryo; these segments fuse to form the body of the adult vertebrate sternum" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004615 cervical vertebral transformation "homeotic transformation of any cervical vertebrae to adopt the fate of another vertebrae" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004618 thoracic vertebral transformation "homeotic transformation of any thoracic vertebrae to adopt the fate of another vertebrae" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa4tm1Mrc/Hoxa4tm1Mrc
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004625 abnormal rib attachment "any anomaly in the in the normal joining of the ribs to the vertebral column or to the sternum" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0004680 small xiphoid process "reduced size of the posterior tip of the sternum" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

 MP:0005508 abnormal skeleton morphology "malformation of the bony framework of the body in vertebrates" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Hoxa9tm1Mrc/Hoxa9tm1Mrc,Hoxb9tm1Mrc/Hoxb9tm1Mrc,Hoxc9tm1Mrc/Hoxc9+,Hoxd9tm1Mrc/Hoxd9tm1Mrc
Genetic Background: involves: 129S7/SvEvBrd

 MP:0010103 small thoracic cage "reduced size of the bony and cartilaginous structure enclosing the thoracic cavity, consisting of the thoracic vertebrae, ribs, costal cartilages, and sternum" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxa6tm1Mrc/Hoxa6tm1Mrc,Hoxb6tm1Mrc/Hoxb6tm1Mrc,Hoxc6tm1Dds/Hoxc6tm1Dds
Genetic Background: involves: 129S7/SvEvBrd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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