ENSDARG00000001889


Danio rerio

Features
Gene ID: ENSDARG00000001889
  
Biological name :tuba1a
  
Synonyms : tuba1a / tubulin, alpha 1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 35708730
Gene end: 35711398
  
Corresponding Affymetrix probe sets: Dr.11310.3.S1_at (Zebrafish Array)   Dr.11310.3.S1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000019888
NCBI entrez gene - 573216     See in Manteia.
RefSeq - NM_001190982
RefSeq Peptide - NP_001177911
swissprot - Q6NWK7
ZFIN ID - ZDB-GENE-090507-4
Ensembl - ENSDARG00000001889
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tuba1c / tubulin, alpha 1cENSDARG00000055216100
tuba2 / tubulin, alpha 2 / TUBA1B* / P05213* / P68363* / tubulin alpha 1b*ENSDARG0000004501498
tuba1b / tuba1c / tubulin, alpha 1cENSDARG0000004536798
si:ch211-114n24.6ENSDARG0000003670098
tuba8l4 / tubulin, alpha 8 like 4ENSDARG0000000626096
tuba8l3 / tubulin, alpha 8 like 3ENSDARG0000007015596
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116494
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464394
si:ch73-199e17.1ENSDARG0000009446694
tuba8l / tubulin, alpha 8 like / TUBA3C* / TUBA3D* / TUBA3E* / Q6PEY2* / Q13748* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin alpha 3c*ENSDARG0000004270893


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0021634 optic nerve formation IMP
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000152 retina retina morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism dead , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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