ENSDARG00000045014


Danio rerio

Features
Gene ID: ENSDARG00000045014
  
Biological name :tuba2
  
Synonyms : tuba2 / tubulin, alpha 2
  
Possible biological names infered from orthology : P05213 / P68363 / TUBA1B / tubulin alpha 1b
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 3336524
Gene end: 3343463
  
Corresponding Affymetrix probe sets: Dr.26381.1.A1_at (Zebrafish Array)   Dr.4872.1.S1_at (Zebrafish Array)   Dr.4872.2.A1_at (Zebrafish Array)   NM_213030_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000066176
NCBI entrez gene - 406303     See in Manteia.
RefSeq - NM_213030
RefSeq Peptide - NP_998195
swissprot - Q6P972
ZFIN ID - ZDB-GENE-040426-1970
Ensembl - ENSDARG00000045014
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P68363ENSG00000123416Homo sapiens
 P05213ENSMUSG00000023004Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tuba1c / tubulin, alpha 1cENSDARG0000005521698
tuba1a / tubulin, alpha 1aENSDARG0000000188998
si:ch211-114n24.6ENSDARG0000003670096
tuba1b / tuba1c / tubulin, alpha 1cENSDARG0000004536796
tuba8l4 / tubulin, alpha 8 like 4ENSDARG0000000626095
tuba8l3 / tubulin, alpha 8 like 3ENSDARG0000007015594
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116494
si:ch73-199e17.1ENSDARG0000009446692
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464392
tuba8l / tubulin, alpha 8 like / TUBA3C* / TUBA3D* / TUBA3E* / Q6PEY2* / Q13748* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin alpha 3c*ENSDARG0000004270892


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr