ENSDARG00000070155


Danio rerio

Features
Gene ID: ENSDARG00000070155
  
Biological name :tuba8l3
  
Synonyms : tuba8l3 / tubulin, alpha 8 like 3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 7662638
Gene end: 7673856
  
Corresponding Affymetrix probe sets: Dr.20214.1.A1_at (Zebrafish Array)   NM_001003558_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000093490
NCBI entrez gene - 445164     See in Manteia.
RefSeq - NM_001003558
RefSeq Peptide - NP_001003558
swissprot - Q6DC49
ZFIN ID - ZDB-GENE-040801-77
Ensembl - ENSDARG00000070155
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tuba8l4 / tubulin, alpha 8 like 4ENSDARG0000000626098
si:ch211-114n24.6ENSDARG0000003670098
tuba1a / tubulin, alpha 1aENSDARG0000000188996
si:ch73-199e17.1ENSDARG0000009446696
tuba1c / tubulin, alpha 1cENSDARG0000005521696
tuba1b / tuba1c / tubulin, alpha 1cENSDARG0000004536795
tuba2 / tubulin, alpha 2 / TUBA1B* / P05213* / P68363* / tubulin alpha 1b*ENSDARG0000004501495
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116494
tuba8l / tubulin, alpha 8 like / TUBA3C* / TUBA3D* / TUBA3E* / Q6PEY2* / Q13748* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin alpha 3c*ENSDARG0000004270892
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464392


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0021782 glial cell development IMP
 biological_processGO:0042552 myelination IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000737 cranium cranium malformed , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , abnormal
Show

 ZFA:0009076 oligodendrocyte oligodendrocyte physical object quality , abnormal
oligodendrocyte cell projection mislocalised , abnormal
Show

 ZFA:0009090 pigment cell pigment cell irregular spatial pattern , abnormal
pigment cell decreased amount , abnormal
Show

 ZFA:0009091 melanocyte melanocyte quality , abnormal
Show

 ZFA:0009135 myelinating Schwann cell myelinating Schwann cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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