ENSDARG00000042708


Danio rerio

Features
Gene ID: ENSDARG00000042708
  
Biological name :tuba8l
  
Synonyms : tuba8l / tubulin, alpha 8 like
  
Possible biological names infered from orthology : P05214 / Q13748 / Q6PEY2 / Tuba3a / Tuba3b / TUBA3C / TUBA3D / TUBA3E / tubulin, alpha 3A / tubulin, alpha 3B / tubulin alpha 3c / tubulin alpha 3d / tubulin alpha 3e
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 28345352
Gene end: 28349859
  
Corresponding Affymetrix probe sets: Dr.20010.2.A1_at (Zebrafish Array)   NM_212772_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062670
NCBI entrez gene - 337223     See in Manteia.
RefSeq - NM_212772
RefSeq Peptide - NP_997937
swissprot - Q6TNP9
ZFIN ID - ZDB-GENE-030131-9167
Ensembl - ENSDARG00000042708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TUBA3EENSGALG00000040586Gallus gallus
 Q13748ENSG00000075886Homo sapiens
 Q13748ENSG00000198033Homo sapiens
 Q6PEY2ENSG00000152086Homo sapiens
 P05214ENSMUSG00000067338Mus musculus
 P05214ENSMUSG00000067702Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tuba1a / tubulin, alpha 1aENSDARG0000000188994
tuba1c / tubulin, alpha 1cENSDARG0000005521693
tuba8l4 / tubulin, alpha 8 like 4ENSDARG0000000626093
si:ch211-114n24.6ENSDARG0000003670093
tuba1b / tuba1c / tubulin, alpha 1cENSDARG0000004536793
tuba2 / tubulin, alpha 2 / TUBA1B* / P05213* / P68363* / tubulin alpha 1b*ENSDARG0000004501492
tuba8l3 / tubulin, alpha 8 like 3ENSDARG0000007015592
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116492
si:ch73-199e17.1ENSDARG0000009446692
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464391


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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