ENSDARG00000045367


Danio rerio

Features
Gene ID: ENSDARG00000045367
  
Biological name :tuba1c
  
Synonyms : tuba1b / tuba1c / tubulin, alpha 1c
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 35713557
Gene end: 35716519
  
Corresponding Affymetrix probe sets: Dr.11310.2.S1_at (Zebrafish Array)   Dr.11310.2.S1_x_at (Zebrafish Array)   NM_194388_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105094
Ensembl peptide - ENSDARP00000133394
NCBI entrez gene - 373080     See in Manteia.
RefSeq - NM_194388
RefSeq Peptide - NP_919369
swissprot - B8A516
swissprot - A0A0R4IG84
ZFIN ID - ZDB-GENE-030822-1
ZFIN ID - ZDB-GENE-061114-1
Ensembl - ENSDARG00000045367
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tuba1c / tubulin, alpha 1cENSDARG0000005521698
tuba1a / tubulin, alpha 1aENSDARG0000000188998
tuba2 / tubulin, alpha 2 / TUBA1B* / P05213* / P68363* / tubulin alpha 1b*ENSDARG0000004501497
si:ch211-114n24.6ENSDARG0000003670097
tuba8l4 / tubulin, alpha 8 like 4ENSDARG0000000626096
tuba8l3 / tubulin, alpha 8 like 3ENSDARG0000007015595
si:ch73-199e17.1ENSDARG0000009446693
tuba8l / tubulin, alpha 8 like / TUBA3C* / TUBA3D* / TUBA3E* / Q6PEY2* / Q13748* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin alpha 3c*ENSDARG0000004270893
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116493
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464393


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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