ENSDARG00000006260


Danio rerio

Features
Gene ID: ENSDARG00000006260
  
Biological name :tuba8l4
  
Synonyms : tuba8l4 / tubulin, alpha 8 like 4
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 6972953
Gene end: 6976107
  
Corresponding Affymetrix probe sets: Dr.664.1.S1_at (Zebrafish Array)   NM_200185_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125797
Ensembl peptide - ENSDARP00000144369
Ensembl peptide - ENSDARP00000125988
Ensembl peptide - ENSDARP00000029933
NCBI entrez gene - 393154     See in Manteia.
RefSeq - NM_200185
RefSeq Peptide - NP_956479
swissprot - I3ISC4
swissprot - I3ISU3
swissprot - Q6NWJ5
swissprot - A9JST4
swissprot - A0A286YB28
ZFIN ID - ZDB-GENE-040426-860
Ensembl - ENSDARG00000006260
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-114n24.6ENSDARG0000003670099
tuba8l3 / tubulin, alpha 8 like 3ENSDARG0000007015598
tuba1a / tubulin, alpha 1aENSDARG0000000188997
tuba1b / tuba1c / tubulin, alpha 1cENSDARG0000004536796
tuba1c / tubulin, alpha 1cENSDARG0000005521696
tuba2 / tubulin, alpha 2 / TUBA1B* / P05213* / P68363* / tubulin alpha 1b*ENSDARG0000004501495
tuba8l2 / tubulin, alpha 8 like 2 / TUBA4A* / P68366* / P68368* / tubulin alpha 4a*ENSDARG0000003116494
si:ch73-199e17.1ENSDARG0000009446694
tuba7l / tubulin, alpha 7 like / P05214* / Tuba3a* / Tuba3b* / TUBA3C* / TUBA3D* / TUBA3E* / Q13748* / Q6PEY2* / tubulin alpha 3c* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin, alpha 3...ENSDARG0000010464393
tuba8l / tubulin, alpha 8 like / TUBA3C* / TUBA3D* / TUBA3E* / Q6PEY2* / Q13748* / tubulin alpha 3d* / tubulin alpha 3e* / tubulin alpha 3c*ENSDARG0000004270892


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002452  Alpha tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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