ENSDARG00000007175


Danio rerio

Features
Gene ID: ENSDARG00000007175
  
Biological name :recql
  
Synonyms : RecQ helicase-like / recql
  
Possible biological names infered from orthology : P46063 / Q9Z129 / RecQ like helicase / RecQ protein-like
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 17424855
Gene end: 17538270
  
Corresponding Affymetrix probe sets: Dr.15761.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130578
Ensembl peptide - ENSDARP00000134146
Ensembl peptide - ENSDARP00000013573
Ensembl peptide - ENSDARP00000091972
NCBI entrez gene - 566018     See in Manteia.
swissprot - A0A0R4ICY7
swissprot - Q1LUY8
swissprot - Q498Z7
ZFIN ID - ZDB-GENE-050809-134
Ensembl - ENSDARG00000007175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RECQLENSGALG00000013174Gallus gallus
 RECQLENSG00000004700Homo sapiens
 RecqlENSMUSG00000030243Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
blm / Bloom syndrome, RecQ helicase-like / P54132* / O88700* / Bloom syndrome protein homolog * / Bloom syndrome RecQ like helicase*ENSDARG0000007708934
recql5 / RecQ helicase-like 5 / Q8VID5* / O94762* / RecQ like helicase 5* / ATP-dependent DNA helicase Q5 *ENSDARG0000005955625
wrn / Werner syndrome / O09053* / Q14191* / Werner syndrome RecQ like helicase*ENSDARG0000009821125
recql4 / RecQ helicase-like 4 / RecQ like helicase 4*ENSDARG0000007751622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR004589  DNA helicase, ATP-dependent, RecQ type
 IPR011545  DEAD/DEAH box helicase domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR018982  RQC domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032284  ATP-dependent DNA helicase RecQ, zinc-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043140 ATP-dependent 3"-5" DNA helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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