ENSDARG00000007407


Danio rerio

Features
Gene ID: ENSDARG00000007407
  
Biological name :barx1
  
Synonyms : barx1 / BARX homeobox 1
  
Possible biological names infered from orthology : Homeobox protein BarH-like 1 / Q9ER42 / Q9HBU1
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 27543093
Gene end: 27545719
  
Corresponding Affymetrix probe sets: Dr.19482.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000014797
NCBI entrez gene - 553644     See in Manteia.
RefSeq - NM_001024949
RefSeq Peptide - NP_001020120
swissprot - B2GRF3
ZFIN ID - ZDB-GENE-050522-28
Ensembl - ENSDARG00000007407
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BARX1ENSGALG00000035557Gallus gallus
 BARX1ENSG00000131668Homo sapiens
 Barx1ENSMUSG00000021381Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
barx2 / BARX homeobox 2 / O08686* / Q9UMQ3* / Homeobox protein BarH-like 2 *ENSDARG0000004109842
bsx / Q6R3Q6 / brain-specific homeobox / Q3C1V8* / Q810B3* / Brain-specific homeobox protein homolog *ENSDARG0000006897626
barhl2 / BarH-like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSDARG0000010436125
lbx1a / ladybird homeobox 1a / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001832124
hlx1 / H2.0-like homeo box 1 (Drosophila) / HLX* / Q14774* / Q61670* / H2.0 like homeobox* / H2.0-like homeobox protein *ENSDARG0000000913424
barhl1a / BarH-like homeobox 1a / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000003550824
lbx2 / ladybird homeobox 2ENSDARG0000002513123
barhl1b / BarH-like homeobox 1b / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000001901323
lbx1b / ladybird homeobox 1b / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001861121
dbx1a / Q9PTU1 / developing brain homeobox 1a / DBX1* / A6NMT0* / P52950* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000008639321
dbx1b / developing brain homeobox 1b / DBX1* / P52950* / A6NMT0* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000000185921
HHEX / hematopoietically expressed homeobox / Q03014*ENSDARG0000009823119
tlx2 / T cell leukemia homeobox 2 / TLX1* / P31314* / T cell leukemia homeobox 1*ENSDARG0000001127319
tlx1 / T cell leukemia homeobox 1 / P31314*ENSDARG0000000396519
nkx6.2 / NK6 homeobox 2 / Q9C056*ENSDARG0000010473518
nkx6.3 / NK6 homeobox 3 / A6NJ46* / Q3UHX8* / Homeobox protein Nkx-6.3 *ENSDARG0000006052917
tlx3b / T cell leukemia homeobox 3bENSDARG0000001761517
nkx6.1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSDARG0000002256917


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000191 dentary dentary malformed , abnormal
Show

 ZFA:0000270 maxilla maxilla malformed , abnormal
Show

 ZFA:0000369 intermandibularis intermandibularis disorganized , abnormal
Show

 ZFA:0000657 entopterygoid entopterygoid absent , abnormal
Show

 ZFA:0000672 hyomandibula hyomandibula morphology , abnormal
Show

 ZFA:0000694 ceratobranchial 5 tooth ceratobranchial 5 tooth immature , abnormal
ceratobranchial 5 tooth decreased size , abnormal
ceratobranchial 5 tooth detached from ceratobranchial 5 bone , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage malformed , abnormal
Meckels cartilage cartilage tissue decreased amount , abnormal
Meckels cartilage decreased size , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001272 palatoquadrate arch palatoquadrate arch bony projection decreased length , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch notched , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch decreased size , abnormal
pharyngeal arch mesenchyme morphology , abnormal
pharyngeal arch joint increased amount , abnormal
pharyngeal arch joint absent , abnormal
pharyngeal arch morphology , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage morphology , ameliorated
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
ceratohyal cartilage decreased size , abnormal
Show

 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage decreased size , abnormal
hyosymplectic cartilage notched , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage chondroblast disorganized , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage malformed , abnormal
ceratobranchial cartilage aplastic , abnormal
Show

 ZFA:0001596 joint joint mislocalised , abnormal
Show

 ZFA:0001651 sternohyoid sternohyoid decreased length , abnormal
sternohyoid detached from bone tissue , abnormal
Show

 ZFA:0001652 head muscle head muscle detached from bone element , abnormal
Show

 ZFA:0007052 hyohyoideus hyohyoideus inverted , abnormal
Show

 ZFA:0009027 chondroblast chondroblast extracellular matrix absent , abnormal
Show

 ZFA:0009084 chondrocyte chondrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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