ENSDARG00000011273


Danio rerio

Features
Gene ID: ENSDARG00000011273
  
Biological name :tlx2
  
Synonyms : T cell leukemia homeobox 2 / tlx2
  
Possible biological names infered from orthology : P31314 / T cell leukemia homeobox 1 / TLX1
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 5656510
Gene end: 5690363
  
Corresponding Affymetrix probe sets: Dr.12588.1.S1_at (Zebrafish Array)   NM_153651_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009610
Ensembl peptide - ENSDARP00000153385
Ensembl peptide - ENSDARP00000138242
NCBI entrez gene - 170781     See in Manteia.
RefSeq - NM_153651
RefSeq Peptide - NP_705937
swissprot - A1A5U3
swissprot - A0A0R4IRH3
ZFIN ID - ZDB-GENE-020208-1
Ensembl - ENSDARG00000011273
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TLX1ENSGALG00000007831Gallus gallus
 TLX1ENSG00000107807Homo sapiens
 Tlx1ENSMUSG00000025215Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tlx1 / T cell leukemia homeobox 1 / P31314*ENSDARG0000000396562
tlx3b / T cell leukemia homeobox 3bENSDARG0000001761556
barhl2 / BarH-like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSDARG0000010436123
barhl1a / BarH-like homeobox 1a / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000003550822
nkx6.1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSDARG0000002256921
barhl1b / BarH-like homeobox 1b / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000001901321
lbx2 / ladybird homeobox 2ENSDARG0000002513118
lbx1b / ladybird homeobox 1b / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001861118
lbx1a / ladybird homeobox 1a / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001832118
dbx1a / Q9PTU1 / developing brain homeobox 1a / DBX1* / A6NMT0* / P52950* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000008639317
dbx1b / developing brain homeobox 1b / DBX1* / P52950* / A6NMT0* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000000185917
nkx6.2 / NK6 homeobox 2 / Q9C056*ENSDARG0000010473517
bsx / Q6R3Q6 / brain-specific homeobox / Q3C1V8* / Q810B3* / Brain-specific homeobox protein homolog *ENSDARG0000006897617
hlx1 / H2.0-like homeo box 1 (Drosophila) / HLX* / Q14774* / Q61670* / H2.0 like homeobox* / H2.0-like homeobox protein *ENSDARG0000000913416
barx2 / BARX homeobox 2 / O08686* / Q9UMQ3* / Homeobox protein BarH-like 2 *ENSDARG0000004109816
nkx6.3 / NK6 homeobox 3 / A6NJ46* / Q3UHX8* / Homeobox protein Nkx-6.3 *ENSDARG0000006052916
HHEX / hematopoietically expressed homeobox / Q03014*ENSDARG0000009823115
barx1 / BARX homeobox 1 / Q9ER42* / Q9HBU1* / Homeobox protein BarH-like 1 *ENSDARG0000000740715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048839 inner ear development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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