ENSDARG00000009471


Danio rerio

Features
Gene ID: ENSDARG00000009471
  
Biological name :nid2b
  
Synonyms : nid2b / nidogen 2b (osteonidogen)
  
Possible biological names infered from orthology : NID2 / nidogen 2 / O88322 / Q14112
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 9643499
Gene end: 9674877
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000019482
Ensembl peptide - ENSDARP00000119933
Ensembl peptide - ENSDARP00000126978
swissprot - F1Q9A6
swissprot - Q5RI93
swissprot - R4GER5
ZFIN ID - ZDB-GENE-040724-143
Ensembl - ENSDARG00000009471
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NID2ENSGALG00000012394Gallus gallus
 NID2ENSG00000087303Homo sapiens
 Nid2ENSMUSG00000021806Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nid2a / nidogen 2a (osteonidogen) / NID2* / Q14112* / O88322* / nidogen 2*ENSDARG0000007570751
nid1b / nidogen 1b / NID1* / P14543* / P10493* / nidogen 1*ENSDARG0000010312935
nid1a / nidogen 1a / NID1* / P14543* / P10493* / nidogen 1*ENSDARG0000006871034
egf / epidermal growth factor / P01132* / P01133* / Mus musculus epidermal growth factor (Egf), transcript variant 3, mRNA.*ENSDARG0000005273912
si:dkey-258f14.3ENSDARG0000007597410
si:dkey-258f14.7ENSDARG000000959255


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000716  Thyroglobulin type-1
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR006605  G2 nidogen/fibulin G2F
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024731  EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Laminin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr