ENSDARG00000068710


Danio rerio

Features
Gene ID: ENSDARG00000068710
  
Biological name :nid1a
  
Synonyms : nid1a / nidogen 1a
  
Possible biological names infered from orthology : NID1 / nidogen 1 / P10493 / P14543
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 50064464
Gene end: 50139916
  
Corresponding Affymetrix probe sets: Dr.12183.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000090249
Ensembl peptide - ENSDARP00000119891
NCBI entrez gene - 562690     See in Manteia.
swissprot - F1R998
swissprot - F1RAG3
ZFIN ID - ZDB-GENE-050302-58
Ensembl - ENSDARG00000068710
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NID1ENSGALG00000042079Gallus gallus
 NID1ENSG00000116962Homo sapiens
 Nid1ENSMUSG00000005397Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nid1b / nidogen 1b / NID1* / P14543* / P10493* / nidogen 1*ENSDARG0000010312956
nid2a / nidogen 2a (osteonidogen) / NID2* / Q14112* / O88322* / nidogen 2*ENSDARG0000007570737
nid2b / nidogen 2b (osteonidogen) / NID2* / Q14112* / O88322* / nidogen 2*ENSDARG0000000947134
egf / epidermal growth factor / P01132* / P01133* / Mus musculus epidermal growth factor (Egf), transcript variant 3, mRNA.*ENSDARG0000005273913
si:dkey-258f14.3ENSDARG0000007597410
si:dkey-258f14.7ENSDARG000000959254


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000716  Thyroglobulin type-1
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR006605  G2 nidogen/fibulin G2F
 IPR009017  Green fluorescent protein
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024731  EGF domain
 IPR026823  Complement Clr-like EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Laminin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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