ENSGALG00000042079


Gallus gallus

Features
Gene ID: ENSGALG00000042079
  
Biological name :NID1
  
Synonyms : NID1 / nidogen 1
  
Possible biological names infered from orthology : P10493 / P14543
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 37985677
Gene end: 38021480
  
Corresponding Affymetrix probe sets: Gga.10494.1.S1_at (Chicken Array)   Gga.1776.1.S1_at (Chicken Array)   GgaAffx.23343.1.S1_at (Chicken Array)   GgaAffx.23394.1.S1_at (Chicken Array)   GgaAffx.6856.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052796
NCBI entrez gene - 395531     See in Manteia.
RefSeq - XM_419556
swissprot - A0A1D5PJ08
Ensembl - ENSGALG00000042079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nid1aENSDARG00000068710Danio rerio
 nid1bENSDARG00000103129Danio rerio
 NID1ENSG00000116962Homo sapiens
 Nid1ENSMUSG00000005397Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NID2 / nidogen 2 / O88322* / Q14112*ENSGALG0000001239442
EGF / pro-epidermal growth factor precursor / P01132* / P01133* / epidermal growth factor* / Mus musculus epidermal growth factor (Egf), transcript variant 3, mRNA.*ENSGALG0000001215514


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000716  Thyroglobulin type-1
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003886  NIDO domain
 IPR006605  G2 nidogen/fibulin G2F
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024731  EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0032836 glomerular basement membrane development IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005605 basal lamina IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0071944 cell periphery IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005518 collagen binding IEA
 molecular_functionGO:0043236 laminin binding IEA
 molecular_functionGO:0043237 laminin-1 binding IEA
 molecular_functionGO:0043394 proteoglycan binding IEA
 molecular_functionGO:0050840 extracellular matrix binding IEA


Pathways (from Reactome)
Pathway description
Laminin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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