ENSDARG00000016749


Danio rerio

Features
Gene ID: ENSDARG00000016749
  
Biological name :slco1c1
  
Synonyms : slco1c1 / solute carrier organic anion transporter family, member 1C1
  
Possible biological names infered from orthology : Q9ERB5 / Q9NYB5
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 2674898
Gene end: 2727573
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115870
Ensembl peptide - ENSDARP00000147503
Ensembl peptide - ENSDARP00000116999
Ensembl peptide - ENSDARP00000039385
NCBI entrez gene - 562772     See in Manteia.
RefSeq - NM_001044997
RefSeq - XM_005164471
RefSeq - XM_009299972
RefSeq Peptide - NP_001038462
swissprot - B3DJD4
swissprot - A5PMD7
swissprot - Q5RIX3
ZFIN ID - ZDB-GENE-041210-50
Ensembl - ENSDARG00000016749
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLCO1C1ENSGALG00000013154Gallus gallus
 Q9NYB5ENSG00000139155Homo sapiens
 Q9ERB5ENSMUSG00000030235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slco1e1 / solute carrier organic anion transporter family, member 1E1ENSDARG0000010078048
slco1d1 / solute carrier organic anion transporter family, member 1D1ENSDARG0000010410846
slco1f2 / solute carrier organic anion transporter family, member 1F2ENSDARG0000010115642
slco1f4 / solute carrier organic anion transporter family, member 1F4ENSDARG0000010101442
slco1f3 / solute carrier organic anion transporter family, member 1F3ENSDARG0000010569136
slco1f1 / solute carrier organic anion transporter family, member 1F1ENSDARG0000010228336
slco3a1 / solute carrier organic anion transporter family, member 3A1 / Q8R3L5* / Q9UIG8*ENSDARG0000001872632
CR938716.1 / Q8R3L5* / Q9UIG8* / SLCO3A1* / solute carrier organic anion transporter family member 3A1*ENSDARG0000006829631
slco2a1 / solute carrier organic anion transporter family, member 2A1 / Q92959* / Q9EPT5*ENSDARG0000006189629
slco2b1 / solute carrier organic anion transporter family, member 2B1 / O94956* / Q8BXB6*ENSDARG0000005460928
slco4a1 / solute carrier organic anion transporter family, member 4A1 / Q96BD0*ENSDARG0000007594828
slco5a1a / solute carrier organic anion transporter family member 5A1a / Q9H2Y9* / SLCO5A1* / solute carrier organic anion transporter family member 5A1*ENSDARG0000007168527


Protein motifs (from Interpro)
Interpro ID Name
 IPR002350  Kazal domain
 IPR004156  Organic anion transporter polypeptide
 IPR020846  Major facilitator superfamily domain
 IPR030764  Solute carrier organic anion transporter family member 1C1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0015721 bile acid and bile salt transport IEA
 biological_processGO:0043252 sodium-independent organic anion transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0015125 bile acid transmembrane transporter activity IBA
 molecular_functionGO:0015347 sodium-independent organic anion transmembrane transporter activity IBA


Pathways (from Reactome)
Pathway description
Transport of organic anions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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