ENSMUSG00000030235


Mus musculus

Features
Gene ID: ENSMUSG00000030235
  
Biological name :Slco1c1
  
Synonyms : Q9ERB5 / Slco1c1 / solute carrier organic anion transporter family, member 1c1
  
Possible biological names infered from orthology : Q9NYB5
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: G2
Gene start: 141524368
Gene end: 141570177
  
Corresponding Affymetrix probe sets: 10542596 (MoGene1.0st)   1423343_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000138093
Ensembl peptide - ENSMUSP00000145342
Ensembl peptide - ENSMUSP00000145058
Ensembl peptide - ENSMUSP00000144889
Ensembl peptide - ENSMUSP00000032362
NCBI entrez gene - 58807     See in Manteia.
MGI - MGI:1889679
RefSeq - NM_021471
RefSeq - NM_001177772
RefSeq Peptide - NP_001171243
RefSeq Peptide - NP_067446
swissprot - Q9ERB5
swissprot - A0A0N4SVD7
swissprot - A0A0N4SUZ6
swissprot - Q66L38
swissprot - A0A0N4SW25
Ensembl - ENSMUSG00000030235
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slco1c1ENSDARG00000016749Danio rerio
 SLCO1C1ENSGALG00000013154Gallus gallus
 Q9NYB5ENSG00000139155Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9QXZ6 / Slco1a1 / solute carrier organic anion transporter family, member 1a1 / P46721* / SLCO1A2* / solute carrier organic anion transporter family member 1A2*ENSMUSG0000004169841
Q9JJL3 / Slco1b2 / Solute carrier organic anion transporter family member 1B2 / Q9Y6L6* / G3V0H7* / Q9NPD5* / SLCO1B1* / SLCO1B3* / SLCO1B7* / AC011604.2* / solute carrier organic anion tr...ENSMUSG0000003023640
Slco1a5 / solute carrier organic anion transporter family, member 1a5 / P46721* / SLCO1A2* / solute carrier organic anion transporter family member 1A2*ENSMUSG0000006397539
Q9EP96 / Slco1a4 / Mus musculus solute carrier organic anion transporter family, member 1a4 (Slco1a4), transcript variant 2, mRNA. / P46721* / SLCO1A2* / solute carrier organic anion transp...ENSMUSG0000003023739
Q99J94 / Slco1a6 / Solute carrier organic anion transporter family member 1A6 / P46721* / SLCO1A2* / solute carrier organic anion transporter family member 1A2*ENSMUSG0000007926238
Gm5724 / P46721* / SLCO1A2* / solute carrier organic anion transporter family member 1A2*ENSMUSG0000008492737
Q8R3L5 / Slco3a1 / Solute carrier organic anion transporter family member 3A1 / Q9UIG8*ENSMUSG0000002579031
Slco5a1 / solute carrier organic anion transporter family, member 5A1 / Q9H2Y9*ENSMUSG0000002593828
Q9EPT5 / Slco2a1 / solute carrier organic anion transporter family, member 2a1 / Q92959*ENSMUSG0000003254828
Q8BXB6 / Slco2b1 / solute carrier organic anion transporter family, member 2b1 / O94956*ENSMUSG0000003073727
Q8K078 / Slco4a1 / Mus musculus solute carrier organic anion transporter family, member 4a1 (Slco4a1), transcript variant 2, mRNA. / Q96BD0* / solute carrier organic anion transporter famil...ENSMUSG0000003896326
Q8BGD4 / Slco4c1 / Solute carrier organic anion transporter family member 4C1 / Q6ZQN7*ENSMUSG0000004069326
Slco6c1 / solute carrier organic anion transporter family, member 6c1 / Q86UG4* / SLCO6A1* / solute carrier organic anion transporter family member 6A1*ENSMUSG0000002633118


Protein motifs (from Interpro)
Interpro ID Name
 IPR002350  Kazal domain
 IPR004156  Organic anion transporter polypeptide
 IPR020846  Major facilitator superfamily domain
 IPR027378  Cyclic nucleotide-regulated ion channel, N-terminal
 IPR030764  Solute carrier organic anion transporter family member 1C1
 IPR036058  Kazal domain superfamily
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0015711 organic anion transport IEA
 biological_processGO:0015721 bile acid and bile salt transport IEA
 biological_processGO:0043252 sodium-independent organic anion transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070327 thyroid hormone transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008514 organic anion transmembrane transporter activity IEA
 molecular_functionGO:0015125 bile acid transmembrane transporter activity IBA
 molecular_functionGO:0015347 sodium-independent organic anion transmembrane transporter activity IBA
 molecular_functionGO:0015349 thyroid hormone transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Transport of organic anions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Lbric-J/Lbrlym3
Genetic Background: C57BL/6-Lbric-J/Lbrlym3

 MP:0005471 decreased thyroxine level "less than the normal concentration of the major hormone dervied from the thryoid gland; it normally affects cellular metabolism" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:13923]
Show

Allelic Composition: Lbric-J/Lbrlym3
Genetic Background: C57BL/6-Lbric-J/Lbrlym3

 MP:0005473 decreased triiodothyronine level "less than the normal concentration of this hormone synthesized and secreted by the thyroid; normally, this is the main thyroid hormone used by the tissues " [MeSH:National Library of Medicine - Medical Subject Headings , 2003, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Lbric-J/Lbrlym3
Genetic Background: C57BL/6-Lbric-J/Lbrlym3

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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