ENSDARG00000018602


Danio rerio

Features
Gene ID: ENSDARG00000018602
  
Biological name :rab5aa
  
Synonyms : rab5aa / RAB5A, member RAS oncogene family, a
  
Possible biological names infered from orthology : AC099811.2 / Q9CQD1 / Rab5a / Ras-related protein Rab-5A
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 20708460
Gene end: 20722368
  
Corresponding Affymetrix probe sets: Dr.7401.1.S1_at (Zebrafish Array)   Dr.7401.1.S2_at (Zebrafish Array)   NM_201485_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032505
Ensembl peptide - ENSDARP00000107354
NCBI entrez gene - 337737     See in Manteia.
RefSeq - NM_201485
RefSeq Peptide - NP_958893
swissprot - Q7ZUW5
ZFIN ID - ZDB-GENE-030131-139
Ensembl - ENSDARG00000018602
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB5AENSGALG00000011272Gallus gallus
 AC099811.2ENSG00000267261Homo sapiens
 Rab5aENSMUSG00000017831Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab5ab / RAB5A, member RAS oncogene family, b / Rab5a* / Q9CQD1* / AC099811.2* / Ras-related protein Rab-5A *ENSDARG0000000725794
rab5c / RAB5C, member RAS oncogene family / P35278* / P51148*ENSDARG0000002671285
rab5b / RAB5B, member RAS oncogene familyENSDARG0000001605971
rab22a / RAB22A, member RAS oncogene family / P35285* / Q9UL26*ENSDARG0000001580744
LO018490.1 / RAB31* / Q13636* / RAB31, member RAS oncogene family*ENSDARG0000011583241
RAB21 / zgc:154045 / P35282* / Q9UL25* / RAB21, member RAS oncogene family*ENSDARG0000010075239
rab20 / RAB20, member RAS oncogene family / P35295* / Q9NX57* / Ras-related protein Rab-20 *ENSDARG0000000504934
Q6IMK3 / dnajc27 / DnaJ (Hsp40) homolog, subfamily C, member 27 / Q8CFP6* / Q9NZQ0* / DnaJ homolog subfamily C member 27 * / DnaJ heat shock protein family (Hsp40) member C27*ENSDARG0000007091625


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030100 regulation of endocytosis IBA
 biological_processGO:0051489 regulation of filopodium assembly IBA
 cellular_componentGO:0005769 early endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0030139 endocytic vesicle IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr