ENSDARG00000005049


Danio rerio

Features
Gene ID: ENSDARG00000005049
  
Biological name :rab20
  
Synonyms : rab20 / RAB20, member RAS oncogene family
  
Possible biological names infered from orthology : P35295 / Q9NX57 / Ras-related protein Rab-20
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 8887528
Gene end: 8895243
  
Corresponding Affymetrix probe sets: Dr.9501.1.S1_at (Zebrafish Array)   NM_212771_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115943
Ensembl peptide - ENSDARP00000122604
NCBI entrez gene - 337199     See in Manteia.
RefSeq - NM_212771
RefSeq Peptide - NP_997936
swissprot - F1QVA7
swissprot - E9QIW7
ZFIN ID - ZDB-GENE-030131-9143
Ensembl - ENSDARG00000005049
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB20ENSGALG00000016844Gallus gallus
 RAB20ENSG00000139832Homo sapiens
 Rab20ENSMUSG00000031504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab5ab / RAB5A, member RAS oncogene family, b / Rab5a* / Q9CQD1* / AC099811.2* / Ras-related protein Rab-5A *ENSDARG0000000725731
rab5aa / RAB5A, member RAS oncogene family, a / Rab5a* / Q9CQD1* / AC099811.2* / Ras-related protein Rab-5A *ENSDARG0000001860231
rab5c / RAB5C, member RAS oncogene family / P35278* / P51148*ENSDARG0000002671230
rab5b / RAB5B, member RAS oncogene familyENSDARG0000001605929
rab22a / RAB22A, member RAS oncogene family / P35285* / Q9UL26*ENSDARG0000001580728
RAB21 / zgc:154045 / P35282* / Q9UL25* / RAB21, member RAS oncogene family*ENSDARG0000010075226
LO018490.1 / RAB31* / Q13636* / RAB31, member RAS oncogene family*ENSDARG0000011583223
Q6IMK3 / dnajc27 / DnaJ (Hsp40) homolog, subfamily C, member 27 / Q8CFP6* / Q9NZQ0* / DnaJ homolog subfamily C member 27 * / DnaJ heat shock protein family (Hsp40) member C27*ENSDARG0000007091620


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030100 regulation of endocytosis IBA
 cellular_componentGO:0005769 early endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0030139 endocytic vesicle IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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