ENSGALG00000016844


Gallus gallus

Features
Gene ID: ENSGALG00000016844
  
Biological name :RAB20
  
Synonyms : RAB20 / RAB20, member RAS oncogene family
  
Possible biological names infered from orthology : P35295 / Q9NX57 / Ras-related protein Rab-20
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 139058851
Gene end: 139081908
  
Corresponding Affymetrix probe sets: Gga.8174.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027160
NCBI entrez gene - 418753     See in Manteia.
RefSeq - XM_416953
swissprot - E1BSP9
Ensembl - ENSGALG00000016844
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab20ENSDARG00000005049Danio rerio
 RAB20ENSG00000139832Homo sapiens
 Rab20ENSMUSG00000031504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB5C / Q98932 / Ras-related protein Rab-5C / P51148* / P35278* / RAB5C, member RAS oncogene family*ENSGALG0000000335929
RAB5A / RAB5A, member RAS oncogene family / P20339* / Q9CQD1* / Ras-related protein Rab-5A *ENSGALG0000001127229
RAB5B / ras-related protein Rab-5B / P61020* / P61021* / RAB5B, member RAS oncogene family*ENSGALG0000004248228
RAB21 / RAB21, member RAS oncogene family / P35282* / Q9UL25*ENSGALG0000001018328
RAB17 / RAB17, member RAS oncogene family / P35292* / Q9H0T7* / Ras-related protein Rab-17 *ENSGALG0000000389927
RAB22A / RAB22A, member RAS oncogene family / P35285* / Q9UL26*ENSGALG0000000755426
RAB31 / RAB31, member RAS oncogene family / Q13636*ENSGALG0000002287426
Q6IMM1 / DNAJC27 / DnaJ homolog subfamily C member 27 / Q8CFP6* / Q9NZQ0* / DnaJ heat shock protein family (Hsp40) member C27*ENSGALG0000002896720


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030100 regulation of endocytosis IBA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 biological_processGO:0090383 phagosome acidification IEA
 biological_processGO:0090385 phagosome-lysosome fusion IEA
 cellular_componentGO:0005769 early endosome IBA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0030139 endocytic vesicle IBA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr