ENSDARG00000020284


Danio rerio

Features
Gene ID: ENSDARG00000020284
  
Biological name :si:ch211-278j3.3
  
Synonyms : si:ch211-278j3.3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 19373428
Gene end: 19422496
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121043
NCBI entrez gene - 568165     See in Manteia.
RefSeq - XM_005160481
RefSeq - XM_691478
swissprot - F1R3T6
ZFIN ID - ZDB-GENE-041014-147
Ensembl - ENSDARG00000020284
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000016514Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf19a / ring finger protein 19A, RBR E3 ubiquitin protein ligase / Q9NV58*ENSDARG0000001204044
rnf19b / ring finger protein 19B / A2A7Q9* / Q6ZMZ0* / E3 ubiquitin-protein ligase RNF19B *ENSDARG0000006092640
rnf144b / ring finger protein 144B / Q7Z419*ENSDARG0000002494012
Q5RFV4 / rnf144aa / ring finger protein 144aa / Q925F3* / P50876* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000002060012
rnf144ab / ring finger protein 144ab / P50876* / Q925F3* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000004255711
rnf14 / ring finger protein 14 / Q9UBS8*ENSDARG0000004390511
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG0000009172710
zmp:0000000524 / RNF14 (1 of many) / RNF14* / Q9UBS8* / ring finger protein 14*ENSDARG0000007868310
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG000001046317


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031127  E3 ubiquitin ligase RBR family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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