ENSDARG00000060926


Danio rerio

Features
Gene ID: ENSDARG00000060926
  
Biological name :rnf19b
  
Synonyms : ring finger protein 19B / rnf19b
  
Possible biological names infered from orthology : A2A7Q9 / E3 ubiquitin-protein ligase RNF19B / Q6ZMZ0
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 35379899
Gene end: 35400819
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116147
NCBI entrez gene - 562396     See in Manteia.
RefSeq - NM_001202440
RefSeq Peptide - NP_001189369
swissprot - T1ECU8
ZFIN ID - ZDB-GENE-060503-281
Ensembl - ENSDARG00000060926
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF19BENSGALG00000039716Gallus gallus
 Q6ZMZ0ENSG00000116514Homo sapiens
 A2A7Q9ENSMUSG00000028793Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf19a / ring finger protein 19A, RBR E3 ubiquitin protein ligase / Q9NV58*ENSDARG0000001204050
si:ch211-278j3.3ENSDARG0000002028435
Q5RFV4 / rnf144aa / ring finger protein 144aa / Q925F3* / P50876* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000002060011
rnf14 / ring finger protein 14 / Q9UBS8*ENSDARG0000004390511
rnf144ab / ring finger protein 144ab / P50876* / Q925F3* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000004255711
rnf144b / ring finger protein 144B / Q7Z419*ENSDARG0000002494010
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG0000009172710
zmp:0000000524 / RNF14 (1 of many) / RNF14* / Q9UBS8* / ring finger protein 14*ENSDARG000000786839
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG000001046316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031127  E3 ubiquitin ligase RBR family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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