ENSDARG00000012040


Danio rerio

Features
Gene ID: ENSDARG00000012040
  
Biological name :rnf19a
  
Synonyms : ring finger protein 19A, RBR E3 ubiquitin protein ligase / rnf19a
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF19A / P50636 / Q9NV58
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 12030832
Gene end: 12078583
  
Corresponding Affymetrix probe sets: Dr.11818.1.A1_at (Zebrafish Array)   Dr.26197.1.S1_at (Zebrafish Array)   Dr.26197.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000006534
NCBI entrez gene - 557995     See in Manteia.
RefSeq - NM_001326695
RefSeq Peptide - NP_001313624
swissprot - E7F0K2
ZFIN ID - ZDB-GENE-030131-9414
Ensembl - ENSDARG00000012040
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF19AENSGALG00000038772Gallus gallus
 Q9NV58ENSG00000034677Homo sapiens
 P50636ENSMUSG00000022280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf19b / ring finger protein 19B / A2A7Q9* / Q6ZMZ0* / E3 ubiquitin-protein ligase RNF19B *ENSDARG0000006092638
si:ch211-278j3.3ENSDARG0000002028429
Q5RFV4 / rnf144aa / ring finger protein 144aa / Q925F3* / P50876* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG000000206009
rnf144ab / ring finger protein 144ab / P50876* / Q925F3* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG000000425579
rnf144b / ring finger protein 144B / Q7Z419*ENSDARG000000249408
rnf14 / ring finger protein 14 / Q9UBS8*ENSDARG000000439057
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG000000917277
zmp:0000000524 / RNF14 (1 of many) / RNF14* / Q9UBS8* / ring finger protein 14*ENSDARG000000786836
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG000001046315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031127  E3 ubiquitin ligase RBR family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005813 centrosome IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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