ENSDARG00000024940


Danio rerio

Features
Gene ID: ENSDARG00000024940
  
Biological name :rnf144b
  
Synonyms : ring finger protein 144B / rnf144b
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF144B / Q7Z419 / Q8BKD6
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 43368572
Gene end: 43392455
  
Corresponding Affymetrix probe sets: Dr.17207.1.A1_at (Zebrafish Array)   NM_201137_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000034051
Ensembl peptide - ENSDARP00000150325
NCBI entrez gene - 394112     See in Manteia.
RefSeq - NM_201137
RefSeq Peptide - NP_957431
swissprot - F1R2U0
ZFIN ID - ZDB-GENE-040426-1292
Ensembl - ENSDARG00000024940
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF144BENSGALG00000012683Gallus gallus
 Q7Z419ENSG00000137393Homo sapiens
 Q8BKD6ENSMUSG00000038068Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf144ab / ring finger protein 144ab / P50876* / Q925F3* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000004255744
Q5RFV4 / rnf144aa / ring finger protein 144aa / Q925F3* / P50876* / RNF144A* / ring finger protein 144A* / E3 ubiquitin-protein ligase RNF144A *ENSDARG0000002060043
rnf19a / ring finger protein 19A, RBR E3 ubiquitin protein ligase / Q9NV58*ENSDARG0000001204024
si:ch211-278j3.3ENSDARG0000002028423
rnf19b / ring finger protein 19B / A2A7Q9* / Q6ZMZ0* / E3 ubiquitin-protein ligase RNF19B *ENSDARG0000006092623
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG0000009172720
rnf14 / ring finger protein 14 / Q9UBS8*ENSDARG0000004390519
zmp:0000000524 / RNF14 (1 of many) / RNF14* / Q9UBS8* / ring finger protein 14*ENSDARG0000007868318
RNF14 (1 of many) / ring finger protein 14 / RNF14* / Q9UBS8*ENSDARG0000010463111


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR031127  E3 ubiquitin ligase RBR family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031966 mitochondrial membrane IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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