ENSDARG00000020289


Danio rerio

Features
Gene ID: ENSDARG00000020289
  
Biological name :pif1
  
Synonyms : pif1 / PIF1 5-to-3 DNA helicase homolog (S. cerevisiae)
  
Possible biological names infered from orthology : Mus musculus PIF1 5-to-3 DNA helicase (Pif1), transcript variant 2, mRNA. / PIF1 5-to-3 DNA helicase / Q80SX8 / Q9H611
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 17096161
Gene end: 17115256
  
Corresponding Affymetrix probe sets: Dr.7149.1.S1_at (Zebrafish Array)   NM_198807_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000154753
Ensembl peptide - ENSDARP00000022087
NCBI entrez gene - 326729     See in Manteia.
RefSeq - NM_198807
RefSeq Peptide - NP_942102
swissprot - A5PMA4
ZFIN ID - ZDB-GENE-030131-4928
Ensembl - ENSDARG00000020289
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PIF1ENSGALG00000009032Gallus gallus
 PIF1ENSG00000140451Homo sapiens
 Pif1ENSMUSG00000041064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BX324227.3ENSDARG0000011094921
BX537305.1ENSDARG0000011383421
AL928650.4ENSDARG0000011385821
BX324227.2ENSDARG0000010974321
BX927253.3ENSDARG0000011431721
AL772241.1ENSDARG0000011079220
BX539310.1ENSDARG0000011651020
CR385053.3ENSDARG0000011415820
CABZ01084081.1ENSDARG0000011152219
BX927362.2ENSDARG0000011291819
AL935126.2ENSDARG0000011130919


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR003840  DNA helicase
 IPR010285  DNA helicase Pif1-like
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000002 mitochondrial genome maintenance IEA
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003678 DNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043141 ATP-dependent 5"-3" DNA helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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