ENSDARG00000022813


Danio rerio

Features
Gene ID: ENSDARG00000022813
  
Biological name :dnd1
  
Synonyms : dnd1 / DND microRNA-mediated repression inhibitor 1 / Q7T1H5
  
Possible biological names infered from orthology : Dead end protein homolog 1 / Q6VY05 / Q8IYX4
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 7397804
Gene end: 7409364
  
Corresponding Affymetrix probe sets: DrAffx.2.5.S1_at (Zebrafish Array)   DrAffx.2.5.S1_s_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000035017
NCBI entrez gene - 373074     See in Manteia.
swissprot - B2GPX0
swissprot - Q7T1H5
ZFIN ID - ZDB-GENE-030828-4
Ensembl - ENSDARG00000022813
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DND1ENSG00000256453Homo sapiens
 Dnd1ENSMUSG00000044595Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945225
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296825
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198525
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456921
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018419
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672318


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034414  Dead end protein 1, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007281 germ cell development IMP
 biological_processGO:0008354 germ cell migration IMP
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0048255 mRNA stabilization IMP
 biological_processGO:0060047 heart contraction IMP
 biological_processGO:0060965 negative regulation of gene silencing by miRNA ISS
 biological_processGO:2000145 regulation of cell motility IMP
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0043073 germ cell nucleus IDA
 cellular_componentGO:0043186 P granule IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0017091 AU-rich element binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000303 female organism female organism absent , abnormal
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 ZFA:0000403 ovary ovary aplastic , abnormal
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 ZFA:0000413 gonad gonad absent , abnormal
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 ZFA:0000598 testis testis neoplastic , abnormal
testis aplastic/hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism sterile , abnormal
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 ZFA:0001262 gonad primordium gonad primordium lacks all parts of type germ line cell , abnormal
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 ZFA:0001263 ovarian follicle stage I ovarian follicle stage I aplastic , abnormal
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 ZFA:0001338 intestine intestine neoplastic , abnormal
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 ZFA:0009006 sperm sperm absent , abnormal
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 ZFA:0009016 germ line cell germ line cell absent , abnormal
germ line cell mislocalised , abnormal
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 ZFA:0009288 primordial germ cell primordial germ cell shape , abnormal
primordial germ cell lacks all parts of type primordial germ cell bleb, abnormal
primordial germ cell decreased cellular motility , abnormal
primordial germ cell cell motility decreased occurrence , abnormal
primordial germ cell decreased amount , abnormal
primordial germ cell mislocalised , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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