ENSDARG00000061985


Danio rerio

Features
Gene ID: ENSDARG00000061985
  
Biological name :rbm47
  
Synonyms : rbm47 / RNA binding motif protein 47
  
Possible biological names infered from orthology : A0AV96 / Q91WT8 / RNA-binding protein 47
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 19353048
Gene end: 19402815
  
Corresponding Affymetrix probe sets: Dr.9611.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116938
NCBI entrez gene - 562991     See in Manteia.
RefSeq - XM_005168360
RefSeq - XM_009307327
RefSeq - NM_001114686
RefSeq - XM_005168359
RefSeq Peptide - NP_001108158
swissprot - A2BIC5
ZFIN ID - ZDB-GENE-030131-9612
Ensembl - ENSDARG00000061985
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM47ENSGALG00000014267Gallus gallus
 RBM47ENSG00000163694Homo sapiens
 Rbm47ENSMUSG00000070780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296846
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945239
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018434
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456932
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672331
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281317


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034440  Putative RNA-binding protein 47, RNA recognition motif 2
 IPR034442  Putative RNA-binding protein 47
 IPR034445  Putative RNA-binding protein 47, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016554 cytidine to uridine editing IEA
 biological_processGO:0060322 head development IMP
 biological_processGO:2000742 regulation of anterior head development IGI
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001114 head head absent , abnormal
head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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