ENSDARG00000026723


Danio rerio

Features
Gene ID: ENSDARG00000026723
  
Biological name :syncripl
  
Synonyms : synaptotagmin binding, cytoplasmic RNA interacting protein, like / syncripl
  
Possible biological names infered from orthology : O60506 / Q7TMK9 / synaptotagmin binding cytoplasmic RNA interacting protein / SYNCRIP
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 50261603
Gene end: 50285417
  
Corresponding Affymetrix probe sets: Dr.7496.1.A1_at (Zebrafish Array)   NM_199679_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127882
Ensembl peptide - ENSDARP00000129514
NCBI entrez gene - 324384     See in Manteia.
RefSeq - NM_199679
RefSeq Peptide - NP_955973
swissprot - Q6NYJ5
swissprot - X1WH05
ZFIN ID - ZDB-GENE-030131-3104
Ensembl - ENSDARG00000026723
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNCRIPENSGALG00000015830Gallus gallus
 O60506ENSG00000135316Homo sapiens
 Q7TMK9ENSMUSG00000032423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018483
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456972
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296834
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198533
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945232
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281313


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034544  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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