ENSDARG00000040184


Danio rerio

Features
Gene ID: ENSDARG00000040184
  
Biological name :syncrip
  
Synonyms : synaptotagmin binding, cytoplasmic RNA interacting protein / syncrip
  
Possible biological names infered from orthology : O60506 / Q7TMK9
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 2731436
Gene end: 2745385
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000127085
Ensembl peptide - ENSDARP00000058778
Ensembl peptide - ENSDARP00000105632
Ensembl peptide - ENSDARP00000118608
Ensembl peptide - ENSDARP00000126603
Ensembl peptide - ENSDARP00000126775
Ensembl peptide - ENSDARP00000126862
Ensembl peptide - ENSDARP00000127064
NCBI entrez gene - 326663     See in Manteia.
RefSeq - NM_214696
RefSeq Peptide - NP_999861
swissprot - F6NN54
swissprot - F1QY96
swissprot - Q6NUZ3
swissprot - R4GDP8
swissprot - R4GE62
swissprot - R4GEE9
swissprot - R4GEZ9
swissprot - R4GF20
ZFIN ID - ZDB-GENE-030131-4862
Ensembl - ENSDARG00000040184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNCRIPENSGALG00000015830Gallus gallus
 O60506ENSG00000135316Homo sapiens
 Q7TMK9ENSMUSG00000032423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456975
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672374
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198532
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296831
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945229
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281313


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034544  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1
 IPR034548  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr