ENSGALG00000015830


Gallus gallus

Features
Gene ID: ENSGALG00000015830
  
Biological name :SYNCRIP
  
Synonyms : heterogeneous nuclear ribonucleoprotein Q / SYNCRIP
  
Possible biological names infered from orthology : O60506 / Q7TMK9 / synaptotagmin binding cytoplasmic RNA interacting protein
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 77153836
Gene end: 77178028
  
Corresponding Affymetrix probe sets: Gga.1370.1.S1_at (Chicken Array)   GgaAffx.11860.1.S1_s_at (Chicken Array)   GgaAffx.21347.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052957
Ensembl peptide - ENSGALP00000055312
Ensembl peptide - ENSGALP00000025475
NCBI entrez gene - 421831     See in Manteia.
RefSeq - XM_015284624
RefSeq - XM_015284620
RefSeq - XM_015284621
RefSeq - XM_015284622
RefSeq - XM_015284623
RefSeq - NM_001031083
RefSeq Peptide - NP_001026254
swissprot - A0A1D5PQZ1
swissprot - F1NZU2
swissprot - A0A1D5PJG4
Ensembl - ENSGALG00000015830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syncripENSDARG00000040184Danio rerio
 syncriplENSDARG00000026723Danio rerio
 O60506ENSG00000135316Homo sapiens
 Q7TMK9ENSMUSG00000032423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPR / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSGALG0000000081481
RBM47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSGALG0000001426735
A1CF / APOBEC1 complementation factor / Q5YD48* / Q9NQ94*ENSGALG0000000376535
RBM46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSGALG0000000927827


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0070934 CRD-mediated mRNA stabilization IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 cellular_componentGO:0097452 GAIT complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008143 poly(A) binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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