ENSGALG00000009278


Gallus gallus

Features
Gene ID: ENSGALG00000009278
  
Biological name :RBM46
  
Synonyms : RBM46 / RNA binding motif protein 46
  
Possible biological names infered from orthology : P86049 / Probable RNA-binding protein 46 / Q8TBY0
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 20583593
Gene end: 20586493
  
Corresponding Affymetrix probe sets: Gga.13970.1.S1_s_at (Chicken Array)   GgaAffx.5841.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015078
NCBI entrez gene - 422404     See in Manteia.
RefSeq - XM_004940895
RefSeq - XM_004940896
RefSeq - XM_420372
swissprot - E1BV69
Ensembl - ENSGALG00000009278
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm46ENSDARG00000079452Danio rerio
 RBM46ENSG00000151962Homo sapiens
 Rbm46ENSMUSG00000033882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A1CF / APOBEC1 complementation factor / Q5YD48* / Q9NQ94*ENSGALG0000000376551
RBM47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSGALG0000001426748
HNRNPR / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSGALG0000000081436
SYNCRIP / heterogeneous nuclear ribonucleoprotein Q / O60506* / Q7TMK9* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSGALG0000001583035


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001829 trophectodermal cell differentiation IEA
 biological_processGO:0048255 mRNA stabilization IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr