ENSMUSG00000033882


Mus musculus

Features
Gene ID: ENSMUSG00000033882
  
Biological name :Rbm46
  
Synonyms : P86049 / Probable RNA-binding protein 46 / Rbm46
  
Possible biological names infered from orthology : Q8TBY0 / RNA binding motif protein 46
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: E3
Gene start: 82837228
Gene end: 82876483
  
Corresponding Affymetrix probe sets: 10498972 (MoGene1.0st)   1439944_at (Mouse Genome 430 2.0 Array)   1443437_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000045511
Ensembl peptide - ENSMUSP00000138429
Ensembl peptide - ENSMUSP00000138728
NCBI entrez gene - 633285     See in Manteia.
MGI - MGI:3645057
RefSeq - XM_017319680
RefSeq - NM_001277170
RefSeq - XM_006501849
RefSeq - XM_006501850
RefSeq - XM_006501851
RefSeq - XM_011240188
RefSeq Peptide - NP_001139800
RefSeq Peptide - NP_001264099
swissprot - P86049
swissprot - S4R1Y9
swissprot - S4R2P5
Ensembl - ENSMUSG00000033882
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm46ENSDARG00000079452Danio rerio
 RBM46ENSGALG00000009278Gallus gallus
 RBM46ENSG00000151962Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A1cf / Q5YD48 / APOBEC1 complementation factor / Q9NQ94*ENSMUSG0000005259552
Rbm47 / Q91WT8 / RNA-binding protein 47 / A0AV96* / RNA binding motif protein 47*ENSMUSG0000007078048
Hnrnpr / heteroous nuclear ribonucleoprotein R isoform a / O43390* / heterogeneous nuclear ribonucleoprotein R*ENSMUSG0000006603736
Q7TMK9 / Syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506*ENSMUSG0000003242335
Dnd1 / Q6VY05 / Dead end protein homolog 1 / Q8IYX4* / DND microRNA-mediated repression inhibitor 1*ENSMUSG0000004459520


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034434  Probable RNA-binding protein 46, RNA recognition motif 1
 IPR034435  Probable RNA-binding protein 46, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001829 trophectodermal cell differentiation IMP
 biological_processGO:0048255 mRNA stabilization IDA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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