ENSMUSG00000066037


Mus musculus

Features
Gene ID: ENSMUSG00000066037
  
Biological name :Hnrnpr
  
Synonyms : heteroous nuclear ribonucleoprotein R isoform a / Hnrnpr
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein R / O43390
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D3
Gene start: 136310942
Gene end: 136359447
  
Corresponding Affymetrix probe sets: 10509228 (MoGene1.0st)   1427129_a_at (Mouse Genome 430 2.0 Array)   1429232_at (Mouse Genome 430 2.0 Array)   1437526_x_at (Mouse Genome 430 2.0 Array)   1438807_at (Mouse Genome 430 2.0 Array)   1439640_at (Mouse Genome 430 2.0 Array)   1452030_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000138399
Ensembl peptide - ENSMUSP00000138263
Ensembl peptide - ENSMUSP00000138859
Ensembl peptide - ENSMUSP00000081239
Ensembl peptide - ENSMUSP00000101476
Ensembl peptide - ENSMUSP00000117096
Ensembl peptide - ENSMUSP00000119666
Ensembl peptide - ENSMUSP00000138190
NCBI entrez gene - 74326     See in Manteia.
MGI - MGI:1891692
RefSeq - XM_017320416
RefSeq - NM_001277122
RefSeq - NM_001277123
RefSeq - NM_028871
RefSeq - XM_006539221
RefSeq - XM_006539222
RefSeq - XM_006539223
RefSeq - XM_006539224
RefSeq - XM_006539225
RefSeq - XM_006539226
RefSeq - XM_006539227
RefSeq - XM_006539228
RefSeq - NM_001277121
RefSeq Peptide - NP_001264050
RefSeq Peptide - NP_001264051
RefSeq Peptide - NP_001264052
RefSeq Peptide - NP_001342111
RefSeq Peptide - NP_083147
swissprot - F7B5B5
swissprot - A2AW40
swissprot - A2AW41
swissprot - Q8VHM5
swissprot - S4R1E9
swissprot - V9GWW3
Ensembl - ENSMUSG00000066037
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnprENSDARG00000014569Danio rerio
 HNRNPRENSGALG00000000814Gallus gallus
 HNRNPRENSG00000125944Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7TMK9 / Syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506*ENSMUSG0000003242382
Rbm47 / Q91WT8 / RNA-binding protein 47 / A0AV96* / RNA binding motif protein 47*ENSMUSG0000007078034
A1cf / Q5YD48 / APOBEC1 complementation factor / Q9NQ94*ENSMUSG0000005259533
Rbm46 / P86049 / Probable RNA-binding protein 46 / Q8TBY0* / RNA binding motif protein 46*ENSMUSG0000003388231
Dnd1 / Q6VY05 / Dead end protein homolog 1 / Q8IYX4* / DND microRNA-mediated repression inhibitor 1*ENSMUSG0000004459513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034410  Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 1
 IPR034411  Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0043086 negative regulation of catalytic activity IEA
 biological_processGO:0061014 positive regulation of mRNA catabolic process IEA
 biological_processGO:0061157 mRNA destabilization IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0043679 axon terminus IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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