ENSG00000125944


Homo sapiens

Features
Gene ID: ENSG00000125944
  
Biological name :HNRNPR
  
Synonyms : heterogeneous nuclear ribonucleoprotein R / HNRNPR / O43390
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.12
Gene start: 23303771
Gene end: 23344336
  
Corresponding Affymetrix probe sets: 208765_s_at (Human Genome U133 Plus 2.0 Array)   208766_s_at (Human Genome U133 Plus 2.0 Array)   232004_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000474437
Ensembl peptide - ENSP00000392799
Ensembl peptide - ENSP00000475760
Ensembl peptide - ENSP00000492909
Ensembl peptide - ENSP00000304405
Ensembl peptide - ENSP00000363741
Ensembl peptide - ENSP00000363745
NCBI entrez gene - 10236     See in Manteia.
OMIM - 607201
RefSeq - XM_017000010
RefSeq - NM_005826
RefSeq - XM_005245711
RefSeq - XM_011540471
RefSeq - XM_011540472
RefSeq - XM_011540474
RefSeq - XM_011540475
RefSeq - XM_011540476
RefSeq - XM_011540477
RefSeq - XM_017000008
RefSeq - XM_017000009
RefSeq - NM_001102397
RefSeq - NM_001102398
RefSeq - NM_001102399
RefSeq - NM_001297620
RefSeq - NM_001297621
RefSeq - NM_001297622
RefSeq Peptide - NP_001095868
RefSeq Peptide - NP_001095869
RefSeq Peptide - NP_001284549
RefSeq Peptide - NP_001284550
RefSeq Peptide - NP_001284551
RefSeq Peptide - NP_005817
RefSeq Peptide - NP_001095867
swissprot - A0A286YEZ8
swissprot - B4DT28
swissprot - O43390
Ensembl - ENSG00000125944
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnprENSDARG00000014569Danio rerio
 HNRNPRENSGALG00000000814Gallus gallus
 HnrnprENSMUSG00000066037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O60506 / SYNCRIP / synaptotagmin binding cytoplasmic RNA interacting proteinENSG0000013531681
RBM47 / A0AV96 / RNA binding motif protein 47ENSG0000016369434
A1CF / Q9NQ94 / APOBEC1 complementation factorENSG0000014858431
RBM46 / Q8TBY0 / RNA binding motif protein 46ENSG0000015196230
DND1 / Q8IYX4 / DND microRNA-mediated repression inhibitor 1ENSG0000025645314


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034410  Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 1
 IPR034411  Heterogeneous nuclear ribonucleoprotein R, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing NAS
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0043086 negative regulation of catalytic activity IEA
 biological_processGO:0061014 positive regulation of mRNA catabolic process IEA
 biological_processGO:0061157 mRNA destabilization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex NAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0043679 axon terminus IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding NAS
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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