ENSGALG00000000814


Gallus gallus

Features
Gene ID: ENSGALG00000000814
  
Biological name :HNRNPR
  
Synonyms : heterogeneous nuclear ribonucleoprotein R / HNRNPR
  
Possible biological names infered from orthology : heteroous nuclear ribonucleoprotein R isoform a / O43390
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 1578985
Gene end: 1658220
  
Corresponding Affymetrix probe sets: GgaAffx.12980.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001183
Ensembl peptide - ENSGALP00000050495
Ensembl peptide - ENSGALP00000049255
Ensembl peptide - ENSGALP00000046387
Ensembl peptide - ENSGALP00000025476
NCBI entrez gene - 419570     See in Manteia.
RefSeq - XM_015297546
RefSeq - NM_001006309
RefSeq - XM_015297543
RefSeq - XM_015297544
RefSeq - XM_015297545
RefSeq Peptide - NP_001006309
swissprot - E1BZR1
swissprot - A0A1D5PCK6
swissprot - A0A1D5P954
swissprot - A0A1D5P155
swissprot - F6SG96
Ensembl - ENSGALG00000000814
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnprENSDARG00000014569Danio rerio
 HNRNPRENSG00000125944Homo sapiens
 HnrnprENSMUSG00000066037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNCRIP / heterogeneous nuclear ribonucleoprotein Q / O60506* / Q7TMK9* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSGALG0000001583070
RBM47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSGALG0000001426732
A1CF / APOBEC1 complementation factor / Q5YD48* / Q9NQ94*ENSGALG0000000376531
RBM46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSGALG0000000927824


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr