ENSGALG00000003765


Gallus gallus

Features
Gene ID: ENSGALG00000003765
  
Biological name :A1CF
  
Synonyms : A1CF / APOBEC1 complementation factor
  
Possible biological names infered from orthology : Q5YD48 / Q9NQ94
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 9823720
Gene end: 9844029
  
Corresponding Affymetrix probe sets: GgaAffx.2354.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005964
Ensembl peptide - ENSGALP00000048156
NCBI entrez gene - 423680     See in Manteia.
RefSeq - XM_003641458
RefSeq - XM_015278705
RefSeq - XM_421561
swissprot - E1BQR8
swissprot - A0A1D5P632
Ensembl - ENSGALG00000003765
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 a1cfENSDARG00000002968Danio rerio
 A1CFENSG00000148584Homo sapiens
 A1cfENSMUSG00000052595Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSGALG0000001426749
RBM46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSGALG0000000927839
HNRNPR / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSGALG0000000081435
SYNCRIP / heterogeneous nuclear ribonucleoprotein Q / O60506* / Q7TMK9* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSGALG0000001583033


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR014720  Double-stranded RNA-binding domain
 IPR033111  APOBEC1 complementation factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007566 embryo implantation IEA
 biological_processGO:0010609 mRNA localization resulting in posttranscriptional regulation of gene expression IEA
 biological_processGO:0016554 cytidine to uridine editing IEA
 biological_processGO:0016556 mRNA modification IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030895 apolipoprotein B mRNA editing enzyme complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of the Editosome


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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