ENSMUSG00000032423


Mus musculus

Features
Gene ID: ENSMUSG00000032423
  
Biological name :Syncrip
  
Synonyms : Q7TMK9 / synaptotagmin binding, cytoplasmic RNA interacting protein / Syncrip
  
Possible biological names infered from orthology : O60506
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: E3.1
Gene start: 88447009
Gene end: 88482574
  
Corresponding Affymetrix probe sets: 10595604 (MoGene1.0st)   1422768_at (Mouse Genome 430 2.0 Array)   1422769_at (Mouse Genome 430 2.0 Array)   1426402_at (Mouse Genome 430 2.0 Array)   1428546_at (Mouse Genome 430 2.0 Array)   1430689_at (Mouse Genome 430 2.0 Array)   1450743_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000134722
Ensembl peptide - ENSMUSP00000134342
Ensembl peptide - ENSMUSP00000134506
Ensembl peptide - ENSMUSP00000063744
Ensembl peptide - ENSMUSP00000133292
Ensembl peptide - ENSMUSP00000133343
Ensembl peptide - ENSMUSP00000133649
Ensembl peptide - ENSMUSP00000133716
Ensembl peptide - ENSMUSP00000133829
Ensembl peptide - ENSMUSP00000134071
NCBI entrez gene - 56403     See in Manteia.
MGI - MGI:1891690
RefSeq - XM_006511294
RefSeq - NM_001284328
RefSeq - NM_001311113
RefSeq - NM_019666
RefSeq - NM_019796
RefSeq - XM_006511293
RefSeq Peptide - NP_062770
RefSeq Peptide - NP_001271257
RefSeq Peptide - NP_001298042
RefSeq Peptide - NP_062640
swissprot - G3UXJ6
swissprot - G3UXU5
swissprot - G3UZ48
swissprot - G3UZI2
swissprot - G3XA76
swissprot - G3V018
swissprot - G3UWM1
swissprot - Q7TMK9
swissprot - A0A0R4J259
Ensembl - ENSMUSG00000032423
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syncripENSDARG00000040184Danio rerio
 syncriplENSDARG00000026723Danio rerio
 SYNCRIPENSGALG00000015830Gallus gallus
 O60506ENSG00000135316Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Hnrnpr / heteroous nuclear ribonucleoprotein R isoform a / O43390* / heterogeneous nuclear ribonucleoprotein R*ENSMUSG0000006603783
Rbm47 / Q91WT8 / RNA-binding protein 47 / A0AV96* / RNA binding motif protein 47*ENSMUSG0000007078034
A1cf / Q5YD48 / APOBEC1 complementation factor / Q9NQ94*ENSMUSG0000005259532
Rbm46 / P86049 / Probable RNA-binding protein 46 / Q8TBY0* / RNA binding motif protein 46*ENSMUSG0000003388230
Dnd1 / Q6VY05 / Dead end protein homolog 1 / Q8IYX4* / DND microRNA-mediated repression inhibitor 1*ENSMUSG0000004459513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034544  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1
 IPR034548  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0070934 CRD-mediated mRNA stabilization IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IDA
 cellular_componentGO:0097452 GAIT complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008143 poly(A) binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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