ENSMUSG00000070780


Mus musculus

Features
Gene ID: ENSMUSG00000070780
  
Biological name :Rbm47
  
Synonyms : Q91WT8 / Rbm47 / RNA-binding protein 47
  
Possible biological names infered from orthology : A0AV96 / RNA binding motif protein 47
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: C3.1
Gene start: 66016549
Gene end: 66173118
  
Corresponding Affymetrix probe sets: 10530269 (MoGene1.0st)   1423411_at (Mouse Genome 430 2.0 Array)   1423412_at (Mouse Genome 430 2.0 Array)   1438021_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144122
Ensembl peptide - ENSMUSP00000144505
Ensembl peptide - ENSMUSP00000144325
Ensembl peptide - ENSMUSP00000144287
Ensembl peptide - ENSMUSP00000092348
Ensembl peptide - ENSMUSP00000092349
Ensembl peptide - ENSMUSP00000109353
Ensembl peptide - ENSMUSP00000109355
Ensembl peptide - ENSMUSP00000128016
Ensembl peptide - ENSMUSP00000144112
NCBI entrez gene - 245945     See in Manteia.
MGI - MGI:2384294
RefSeq - XM_006503962
RefSeq - NM_001127382
RefSeq - NM_001291226
RefSeq - NM_139065
RefSeq - NM_178446
RefSeq - XM_006503956
RefSeq Peptide - NP_001278155
RefSeq Peptide - NP_620704
RefSeq Peptide - NP_848541
RefSeq Peptide - NP_001120854
swissprot - Q91WT8
swissprot - D3YXZ5
swissprot - D3Z113
swissprot - D3Z5E3
Ensembl - ENSMUSG00000070780
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm47ENSDARG00000061985Danio rerio
 RBM47ENSGALG00000014267Gallus gallus
 RBM47ENSG00000163694Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A1cf / Q5YD48 / APOBEC1 complementation factor / Q9NQ94*ENSMUSG0000005259548
Rbm46 / P86049 / Probable RNA-binding protein 46 / Q8TBY0* / RNA binding motif protein 46*ENSMUSG0000003388243
Hnrnpr / heteroous nuclear ribonucleoprotein R isoform a / O43390* / heterogeneous nuclear ribonucleoprotein R*ENSMUSG0000006603737
Q7TMK9 / Syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506*ENSMUSG0000003242336
Dnd1 / Q6VY05 / Dead end protein homolog 1 / Q8IYX4* / DND microRNA-mediated repression inhibitor 1*ENSMUSG0000004459517


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034440  Putative RNA-binding protein 47, RNA recognition motif 2
 IPR034442  Putative RNA-binding protein 47
 IPR034445  Putative RNA-binding protein 47, RNA recognition motif 3
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0016554 cytidine to uridine editing IGI
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001265 reduced body size "smaller than average body weight, height and/or length of an organism compared to controls" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:23170]
Show

Allelic Composition: Ildr1Gt(D178D03)Wrst/Ildr1Gt(D178D03)Wrst
Genetic Background: involves: 129S2/SvPas * Swiss Webster

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ildr1Gt(D178D03)Wrst/Ildr1Gt(D178D03)Wrst
Genetic Background: involves: 129S2/SvPas * Swiss Webster

 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ildr1Gt(D178D03)Wrst/Ildr1Gt(D178D03)Wrst
Genetic Background: involves: 129S2/SvPas * Swiss Webster

 MP:0008770 decreased survivor rate "a smaller percentage of organisms than expected survive to adulthood and have a lifespan similar to controls" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ildr1Gt(D178D03)Wrst/Ildr1Gt(D178D03)Wrst
Genetic Background: involves: 129S2/SvPas * Swiss Webster

 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Ildr1Gt(D178D03)Wrst/Ildr1Gt(D178D03)Wrst
Genetic Background: involves: 129S2/SvPas * Swiss Webster

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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