ENSDARG00000079452


Danio rerio

Features
Gene ID: ENSDARG00000079452
  
Biological name :rbm46
  
Synonyms : rbm46 / RNA binding motif protein 46
  
Possible biological names infered from orthology : P86049 / Probable RNA-binding protein 46 / Q8TBY0
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 10127163
Gene end: 10137776
  
Corresponding Affymetrix probe sets: Dr.6535.1.A1_at (Zebrafish Array)   Dr.6535.2.A1_at (Zebrafish Array)   NM_001080024_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000099341
Ensembl peptide - ENSDARP00000150117
NCBI entrez gene - 566042     See in Manteia.
RefSeq - NM_001080024
RefSeq Peptide - NP_001073493
swissprot - F1RBR1
ZFIN ID - ZDB-GENE-061013-298
Ensembl - ENSDARG00000079452
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM46ENSGALG00000009278Gallus gallus
 RBM46ENSG00000151962Homo sapiens
 Rbm46ENSMUSG00000033882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296849
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198545
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456936
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672335
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018435
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281320


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034434  Probable RNA-binding protein 46, RNA recognition motif 1
 IPR034435  Probable RNA-binding protein 46, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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