ENSDARG00000024631


Danio rerio

Features
Gene ID: ENSDARG00000024631
  
Biological name :nlrc5
  
Synonyms : nlrc5 / NLR family, CARD domain containing 5
  
Possible biological names infered from orthology : C3VPR6 / Protein NLRC5 / Q86WI3
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 17624295
Gene end: 17657802
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000147191
Ensembl peptide - ENSDARP00000153101
Ensembl peptide - ENSDARP00000035227
Ensembl peptide - ENSDARP00000126444
Ensembl peptide - ENSDARP00000145244
Ensembl peptide - ENSDARP00000146586
NCBI entrez gene - 100535184     See in Manteia.
RefSeq - XM_003200446
RefSeq - XM_017352040
swissprot - E7F6X9
ZFIN ID - ZDB-GENE-080429-2
Ensembl - ENSDARG00000024631
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NLRC5ENSGALG00000001256Gallus gallus
 NLRC5ENSG00000140853Homo sapiens
 Nlrc5ENSMUSG00000074151Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-279j5.1ENSDARG0000010145912
si:dkey-16p6.1ENSDARG0000010168912
si:dkey-121n8.7ENSDARG0000009406712
nlrc8 / NLR family CARD domain containing 8ENSDARG0000007681912
si:ch211-22k7.9ENSDARG0000008778812
si:dkey-13n15.11ENSDARG0000007800212
si:dkey-14o6.1ENSDARG0000009838312
si:ch211-149a19.3ENSDARG0000007945612
si:ch211-127b6.2 / si:dkey-196n19.2ENSDARG0000010332412
si:ch211-233m11.1ENSDARG0000007465311
si:dkey-156c23.1 / si:ch211-226o13.1ENSDARG0000008771411
si:ch211-250k18.5ENSDARG0000006874911
si:dkey-230i18.2ENSDARG0000009353211
si:dkey-16p6.1 / si:ch211-76m11.5 / si:dkey-159n16.2ENSDARG0000008883611
si:ch73-24k9.2ENSDARG0000007891211
si:ch211-196h16.4ENSDARG0000009478211
zgc:174944 / si:dkey-16p6.1ENSDARG0000009982511
si:dkey-31n13.4 / si:dkey-156c23.1ENSDARG0000010131211
si:dkey-16p6.1ENSDARG0000008824511
nlrc6 / NLR family CARD domain containing 6ENSDARG0000009132011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR006553  Leucine-rich repeat, cysteine-containing subtype
 IPR007111  NACHT nucleoside triphosphatase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr