ENSGALG00000001256


Gallus gallus

Features
Gene ID: ENSGALG00000001256
  
Biological name :NLRC5
  
Synonyms : Gallus gallus NLR family CARD domain containing 5 (NLRC5), mRNA. / NLRC5
  
Possible biological names infered from orthology : C3VPR6 / NLR family CARD domain containing 5 / Protein NLRC5 / Q86WI3
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 676354
Gene end: 711376
  
Corresponding Affymetrix probe sets: Gga.10107.1.A1_at (Chicken Array)   Gga.10107.1.S1_s_at (Chicken Array)   GgaAffx.23629.1.S1_s_at (Chicken Array)   GgaAffx.23629.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048249
Ensembl peptide - ENSGALP00000051622
Ensembl peptide - ENSGALP00000001906
NCBI entrez gene - 100857413     See in Manteia.
RefSeq - XM_015292328
RefSeq - XM_004944054
RefSeq - XM_004944055
RefSeq - XM_004944056
RefSeq - XM_015292327
RefSeq - NM_001318435
RefSeq Peptide - NP_001305364
swissprot - A0A1D5PFQ5
swissprot - F1NYZ9
swissprot - A0A1D5P6C4
Ensembl - ENSGALG00000001256
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nlrc5ENSDARG00000024631Danio rerio
 NLRC5ENSG00000140853Homo sapiens
 Nlrc5ENSMUSG00000074151Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CIITA / class II major histocompatibility complex transactivator / P33076* / P79621* / MHC class II transactivator *ENSGALG0000000717112
NLRC3 / NLR family CARD domain containing 3 / Q5DU56* / Q7RTR2* / Protein NLRC3 *ENSGALG0000003327811
NOD1 / Gallus gallus nucleotide binding oligomerization domain containing 1 (NOD1), mRNA. / Q8BHB0* / Q9Y239* / nucleotide binding oligomerization domain containing 1* / Nucleotide-binding ...ENSGALG0000003680710
NLRX1 / NLR family member X1 / Q3TL44* / Q86UT6*ENSGALG000000440538


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR006553  Leucine-rich repeat, cysteine-containing subtype
 IPR007111  NACHT nucleoside triphosphatase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0043549 regulation of kinase activity IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045345 positive regulation of MHC class I biosynthetic process IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0060335 positive regulation of interferon-gamma-mediated signaling pathway IEA
 biological_processGO:0060339 negative regulation of type I interferon-mediated signaling pathway IEA
 biological_processGO:0060340 positive regulation of type I interferon-mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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