ENSGALG00000007171


Gallus gallus

Features
Gene ID: ENSGALG00000007171
  
Biological name :CIITA
  
Synonyms : CIITA / class II major histocompatibility complex transactivator
  
Possible biological names infered from orthology : MHC class II transactivator / P33076 / P79621
  
Species: Gallus gallus
  
Chr. number: 14
Strand: -1
Band:
Gene start: 9120605
Gene end: 9138407
  
Corresponding Affymetrix probe sets: Gga.11057.1.S1_at (Chicken Array)   Gga.11057.1.S1_s_at (Chicken Array)   GgaAffx.22175.1.S1_at (Chicken Array)   GgaAffx.4491.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000011599
NCBI entrez gene - 416633     See in Manteia.
RefSeq - XM_004945316
RefSeq - XM_414932
swissprot - F1NAC7
Ensembl - ENSGALG00000007171
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ciitaENSDARG00000090851Danio rerio
 CIITAENSG00000179583Homo sapiens
 CiitaENSMUSG00000022504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NLRC5 / Gallus gallus NLR family CARD domain containing 5 (NLRC5), mRNA. / C3VPR6* / Q86WI3* / Protein NLRC5 * / NLR family CARD domain containing 5*ENSGALG0000000125621
NOD1 / Gallus gallus nucleotide binding oligomerization domain containing 1 (NOD1), mRNA. / Q8BHB0* / Q9Y239* / nucleotide binding oligomerization domain containing 1* / Nucleotide-binding ...ENSGALG0000003680714
NLRC3 / NLR family CARD domain containing 3 / Q5DU56* / Q7RTR2* / Protein NLRC3 *ENSGALG0000003327814
NLRX1 / NLR family member X1 / Q3TL44* / Q86UT6*ENSGALG0000004405311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR007111  NACHT nucleoside triphosphatase
 IPR008095  MHC class II transactivator
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0034341 response to interferon-gamma IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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